Pseudomonas putida HB3267

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida HB3267 is a mesophilic, gram-negative bacterium characterized by its rod shape and the presence of flagella, which enables its mobility. This organism is classified as a heterotroph, relying on organic compounds as its energy source, and it exhibits a facultative oxygen requirement, allowing it to thrive in both aerobic and anaerobic environments. Typically found in soil and wastewater habitats, P. putida HB3267 exists as a free-living organism, contributing to the microbial diversity and functionality of these ecosystems. The bacterium possesses two replicons, indicating a complex genetic structure that may facilitate adaptability and resilience in varied environmental conditions. Its double-membrane system is a typical feature of gram-negative bacteria, providing an additional layer of protection and contributing to its overall metabolic capabilities. The ecological role of Pseudomonas putida HB3267 is significant, particularly in the context of bioremediation. Its ability to degrade various organic pollutants in wastewater environments highlights its potential application in environmental biotechnology. This bacterium's metabolic versatility not only aids in nutrient cycling within its habitat but also positions it as a valuable agent for bioremediation efforts aimed at mitigating pollution. Accessions NC_019905.1 and NC_019906.1 provide genomic insights that could further enhance our understanding of its functional capabilities and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainHB3267

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida HB3267
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida HB3267, complete sequence.

Gene Summary

Adenine Count

1105230 bp

Thymine Count

1092397 bp

Guanine Count

1831212 bp

Cytosine Count

1846911 bp

Genome Length

5875750 bp

Protein-coding Genes

5345 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipoyl(octanoyl) transferase lipbB479_RS23595Not AvailableNegative5170246 - 517089323618.4
duf493 domain-containing proteinB479_RS23600Not AvailableNegative5170893 - 517116810121.2
d-alanyl-d-alanine carboxypeptidase family proteinB479_RS23605Not AvailableNegative5171242 - 517240242245.7
septal ring lytic transglycosylase rlpa family proteinB479_RS23610Not AvailableNegative5172629 - 517363036033.8
lytic murein transglycosylase bB479_RS23615Not AvailableNegative5173630 - 517464037681.8
rod shape-determining protein rodaB479_RS23620Not AvailableNegative5174658 - 517576140195.9
penicillin-binding protein 2B479_RS23625Not AvailableNegative5175800 - 517768970319.4
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhB479_RS23630Not AvailableNegative5177706 - 517817317669.6
ribosome silencing factorB479_RS23635Not AvailableNegative5178184 - 517860315647.5
nicotinate-nucleotide adenylyltransferaseB479_RS23640Not AvailableNegative5178647 - 517930624075.9

Displaying genes 4711 – 4720 of 5446 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.