Pseudomonas putida S12

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida S12 is a Gram-negative, rod-shaped bacterium that is classified as a heterotroph, deriving its energy from organic compounds. This microorganism is capable of existing in diverse environments, particularly in soil and wastewater habitats. P. putida S12 is facultative, meaning it can thrive in both aerobic and anaerobic conditions, which enhances its adaptability to varying environmental oxygen levels. The bacterium demonstrates mobility, characterized by the presence of flagella, which allows it to move toward favorable conditions and away from harmful environments. P. putida S12 contains two replicons and has a double-membrane structure, typical of Gram-negative bacteria. This organism is free-living, indicating it does not rely on a host organism for survival, which allows it to play significant roles in nutrient cycling and bioremediation processes in its natural habitats. Its mesophilic temperature range further supports its versatility, as it can grow optimally in moderate temperature conditions. In summary, Pseudomonas putida S12 is a versatile and adaptive bacterium that plays a crucial role in soil and wastewater ecosystems. Its ability to utilize various organic compounds and thrive in fluctuating oxygen levels highlights its ecological importance, particularly in bioremediation and soil health maintenance. The organism's mobility and free-living nature suggest that it may contribute to the microbial diversity and functionality within its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainS12

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida S12
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida S12 plasmid pTTS12, complete sequence.

Gene Summary

Adenine Count

120689 bp

Thymine Count

125420 bp

Guanine Count

170588 bp

Cytosine Count

167203 bp

Genome Length

583900 bp

Protein-coding Genes

629 genes

Non-Coding Genes

14 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polyamine abc transporter substrate-binding proteinRPPX_RS09795Not AvailableNegative2188181 - 218928440689.0
histone deacetylase family proteinRPPX_RS09800Not AvailableNegative2189287 - 219032737731.3
arac family transcriptional regulatorRPPX_RS09805Not AvailableNegative2190624 - 219161636646.2
aspartate ammonia-lyaseRPPX_RS09810Not AvailableNegative2191847 - 219327151045.0
lysr substrate-binding domain-containing proteinRPPX_RS09815Not AvailablePositive2193454 - 219437133547.6
hypothetical proteinRPPX_RS09820Not AvailableNegative2194363 - 219498923633.9
5-(carboxyamino)imidazole ribonucleotide mutaseRPPX_RS09825Not AvailablePositive2195259 - 219575016944.6
5-(carboxyamino)imidazole ribonucleotide synthaseRPPX_RS09830Not AvailablePositive2195761 - 219684338744.5
glsb/yeaq/ymge family stress response membrane proteinRPPX_RS09835Not AvailablePositive2196952 - 21971978340.75
duf3299 domain-containing proteinRPPX_RS09840Not AvailablePositive2197210 - 219777920582.0

Displaying genes 2691 – 2700 of 5900 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.