Pseudomonas putida S12

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida S12 is a Gram-negative, rod-shaped bacterium that is classified as a heterotroph, deriving its energy from organic compounds. This microorganism is capable of existing in diverse environments, particularly in soil and wastewater habitats. P. putida S12 is facultative, meaning it can thrive in both aerobic and anaerobic conditions, which enhances its adaptability to varying environmental oxygen levels. The bacterium demonstrates mobility, characterized by the presence of flagella, which allows it to move toward favorable conditions and away from harmful environments. P. putida S12 contains two replicons and has a double-membrane structure, typical of Gram-negative bacteria. This organism is free-living, indicating it does not rely on a host organism for survival, which allows it to play significant roles in nutrient cycling and bioremediation processes in its natural habitats. Its mesophilic temperature range further supports its versatility, as it can grow optimally in moderate temperature conditions. In summary, Pseudomonas putida S12 is a versatile and adaptive bacterium that plays a crucial role in soil and wastewater ecosystems. Its ability to utilize various organic compounds and thrive in fluctuating oxygen levels highlights its ecological importance, particularly in bioremediation and soil health maintenance. The organism's mobility and free-living nature suggest that it may contribute to the microbial diversity and functionality within its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainS12

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida S12
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida S12 plasmid pTTS12, complete sequence.

Gene Summary

Adenine Count

120689 bp

Thymine Count

125420 bp

Guanine Count

170588 bp

Cytosine Count

167203 bp

Genome Length

583900 bp

Protein-coding Genes

629 genes

Non-Coding Genes

14 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is3 family transposaseRPPX_RS29395Not AvailablePositive1794869 - 179622351718.6
oprd family porinRPPX_RS08010Not AvailableNegative1796322 - 179764147823.4
tonb-dependent receptorRPPX_RS08015Not AvailablePositive1798115 - 180018476372.5
hypothetical proteinRPPX_RS30800Not AvailableNegative1800251 - 18004487319.96
agmatine deiminaseRPPX_RS08020Not AvailableNegative1800641 - 180174740810.9
dtdp-4-dehydrorhamnose 3,5-epimeraseRPPX_RS08025Not AvailablePositive1802025 - 180257020343.2
atp-binding proteinRPPX_RS08030Not AvailablePositive1802613 - 180442767453.5
sigma-54-dependent transcriptional regulatorRPPX_RS08035Not AvailablePositive1804424 - 180583050977.2
yiid c-terminal domain-containing proteinRPPX_RS08040Not AvailablePositive1805830 - 180628517017.5
3'(2'),5'-bisphosphate nucleotidase cysqRPPX_RS08045Not AvailableNegative1806446 - 180726429041.6

Displaying genes 2321 – 2330 of 5900 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.