Pseudomonas putida S12

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida S12 is a Gram-negative, rod-shaped bacterium that is classified as a heterotroph, deriving its energy from organic compounds. This microorganism is capable of existing in diverse environments, particularly in soil and wastewater habitats. P. putida S12 is facultative, meaning it can thrive in both aerobic and anaerobic conditions, which enhances its adaptability to varying environmental oxygen levels. The bacterium demonstrates mobility, characterized by the presence of flagella, which allows it to move toward favorable conditions and away from harmful environments. P. putida S12 contains two replicons and has a double-membrane structure, typical of Gram-negative bacteria. This organism is free-living, indicating it does not rely on a host organism for survival, which allows it to play significant roles in nutrient cycling and bioremediation processes in its natural habitats. Its mesophilic temperature range further supports its versatility, as it can grow optimally in moderate temperature conditions. In summary, Pseudomonas putida S12 is a versatile and adaptive bacterium that plays a crucial role in soil and wastewater ecosystems. Its ability to utilize various organic compounds and thrive in fluctuating oxygen levels highlights its ecological importance, particularly in bioremediation and soil health maintenance. The organism's mobility and free-living nature suggest that it may contribute to the microbial diversity and functionality within its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainS12

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida S12
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida S12 plasmid pTTS12, complete sequence.

Gene Summary

Adenine Count

120689 bp

Thymine Count

125420 bp

Guanine Count

170588 bp

Cytosine Count

167203 bp

Genome Length

583900 bp

Protein-coding Genes

629 genes

Non-Coding Genes

14 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glxa family transcriptional regulatorRPPX_RS07795Not AvailableNegative1748868 - 174997441110.6
l-serine ammonia-lyaseRPPX_RS07800Not AvailableNegative1750468 - 175184449098.9
choline abc transporter substrate-binding proteinRPPX_RS07805Not AvailablePositive1752297 - 175324434583.5
choline abc transporter permease subunitRPPX_RS07810Not AvailablePositive1753326 - 175417430459.4
choline abc transporter atp-binding proteinRPPX_RS07815Not AvailablePositive1754171 - 175534943727.4
imidazole glycerol phosphate synthase subunit hisfRPPX_RS07820Not AvailableNegative1755524 - 175629427146.5
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseRPPX_RS07825Not AvailableNegative1756305 - 175704225908.3
duf2164 domain-containing proteinRPPX_RS07830Not AvailableNegative1757070 - 175733010065.0
imidazole glycerol phosphate synthase subunit hishRPPX_RS07835Not AvailableNegative1757331 - 175796923566.1
imidazoleglycerol-phosphate dehydratase hisbRPPX_RS07840Not AvailableNegative1757970 - 175856321944.4

Displaying genes 2281 – 2290 of 5900 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.