Porphyromonas gingivalis SJD2

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Porphyromonas

Description

Porphyromonas gingivalis SJD2 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments. It is classified as an anaerobe, indicating that it requires an oxygen-free atmosphere for growth. This species is non-motile, lacking flagella, and it possesses a mesophilic temperature range with an optimal growth temperature of 37°C. P. gingivalis SJD2 features a unique cellular structure characterized by two membranes, typical of Gram-negative bacteria, and it has a single replicon. Unlike some bacteria, this organism does not undergo sporulation, which suggests a reliance on specific environmental conditions for survival and reproduction. Ecologically, P. gingivalis SJD2 is noted for its free-living biotic relationship, indicating that it can exist independently without a host but is often associated with host environments, particularly in the oral cavity. This association is significant as P. gingivalis is commonly linked to periodontal disease and impacts the oral microbiome's health. The information regarding its habitat and oxygen requirement suggests that P. gingivalis SJD2 may play a role in the complex interactions within the oral microbiota, potentially influencing health and disease states. Understanding its traits can provide insights into microbial ecology and the mechanisms by which certain bacteria contribute to oral health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPorphyromonadaceae
GenusPorphyromonas
SpeciesPorphyromonas gingivalis
StrainSJD2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Porphyromonas gingivalis SJD2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyromonas gingivalis SJD2 contig99, whole genome shotgun

Gene Summary

Adenine Count

602657 bp

Thymine Count

599540 bp

Guanine Count

563785 bp

Cytosine Count

562868 bp

Genome Length

2328850 bp

Protein-coding Genes

2020 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nifr3 family tim-barrel proteinSJDPG2_03230Not AvailableNegative336735 - 33773636972.3
sulfate permeaseSJDPG2_03235Not AvailableNegative337733 - 33940959621.5
rex family transcriptional regulatorSJDPG2_03240Not AvailablePositive340394 - 34105023871.9
2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseSJDPG2_03245Not AvailablePositive341119 - 34177824604.7
peptidase family c25SJDPG2_03250Not AvailablePositive341869 - 345267125461.0
membrane proteinSJDPG2_03255Not AvailablePositive345343 - 34651843269.4
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseSJDPG2_03260Not AvailablePositive346525 - 34701317651.4
rna methyltransferaseSJDPG2_03265Not AvailableNegative347116 - 34796732250.3
Trna-glnNot AvailableNot AvailablePositive348171 - 348244Not Available
cytidine deaminaseSJDPG2_03275Not AvailablePositive348507 - 34898317177.6

Displaying genes 351 – 360 of 2071 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.