Porphyromonas gingivalis SJD2

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Porphyromonas

Description

Porphyromonas gingivalis SJD2 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments. It is classified as an anaerobe, indicating that it requires an oxygen-free atmosphere for growth. This species is non-motile, lacking flagella, and it possesses a mesophilic temperature range with an optimal growth temperature of 37°C. P. gingivalis SJD2 features a unique cellular structure characterized by two membranes, typical of Gram-negative bacteria, and it has a single replicon. Unlike some bacteria, this organism does not undergo sporulation, which suggests a reliance on specific environmental conditions for survival and reproduction. Ecologically, P. gingivalis SJD2 is noted for its free-living biotic relationship, indicating that it can exist independently without a host but is often associated with host environments, particularly in the oral cavity. This association is significant as P. gingivalis is commonly linked to periodontal disease and impacts the oral microbiome's health. The information regarding its habitat and oxygen requirement suggests that P. gingivalis SJD2 may play a role in the complex interactions within the oral microbiota, potentially influencing health and disease states. Understanding its traits can provide insights into microbial ecology and the mechanisms by which certain bacteria contribute to oral health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPorphyromonadaceae
GenusPorphyromonas
SpeciesPorphyromonas gingivalis
StrainSJD2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Porphyromonas gingivalis SJD2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyromonas gingivalis SJD2 contig99, whole genome shotgun

Gene Summary

Adenine Count

602657 bp

Thymine Count

599540 bp

Guanine Count

563785 bp

Cytosine Count

562868 bp

Genome Length

2328850 bp

Protein-coding Genes

2020 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-trpNot AvailableNot AvailablePositive19038 - 19113Not Available
elongation factor tuSJDPG2_00100Not AvailableNegative19184 - 2037143687.6
Trna-thrNot AvailableNot AvailablePositive20439 - 20510Not Available
Trna-tyrNot AvailableNot AvailablePositive20540 - 20625Not Available
integraseSJDPG2_00115Not AvailableNegative20765 - 2196746240.6
30s ribosomal protein s21SJDPG2_00120Not AvailableNegative22044 - 222357415.27
methionine abc transporter substrate-binding proteinSJDPG2_00125Not AvailableNegative22397 - 2491995385.0
zinc metalloproteaseSJDPG2_00130Not AvailableNegative24929 - 2624848639.2
hypothetical proteinSJDPG2_00135Not AvailableNegative26401 - 265264958.95
hypothetical proteinSJDPG2_00140Not AvailablePositive26525 - 267046652.22

Displaying genes 21 – 30 of 2071 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.