Marinomonas profundimaris str. D104

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Oceanospirillaceae

Genus

Marinomonas

Description

Marinomonas profundimaris str. D104 is a marine bacterium characterized by a single replicon, which is a notable trait in its genomic structure. The genome of this strain is represented in the database under the accession number AYOZ00000000.1, providing a reference point for researchers interested in its genetic and functional attributes. As a member of the Marinomonas genus, Marinomonas profundimaris str. D104 is positioned within a group of bacteria known for their association with marine environments. This ecological niche suggests that the species may play a role in marine biogeochemical cycles, potentially influencing nutrient dynamics in ocean ecosystems. The presence of a single replicon indicates a streamlined genomic organization, which could be advantageous for adaptability and survival in fluctuating marine conditions. Given its marine origin, Marinomonas profundimaris str. D104 may also be involved in interactions with other marine microorganisms, contributing to the complexity of microbial communities in the ocean. Understanding this strain's specific roles and functions could provide insights into the ecological balance and health of marine ecosystems. Overall, the genomic characteristics and environmental associations of Marinomonas profundimaris str. D104 underscore its potential significance in marine microbiology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyOceanospirillaceae
GenusMarinomonas
SpeciesMarinomonas profundimaris
StrainD104

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Marinomonas profundimaris strain D104 contig9, whole genome

Gene Summary

Adenine Count

1062876 bp

Thymine Count

1053647 bp

Guanine Count

849280 bp

Cytosine Count

867566 bp

Genome Length

3833369 bp

Protein-coding Genes

3576 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna methyltransferaseD104_11135Not AvailableNegative2282474 - 228383851141.0
methionyl-trna formyltransferaseD104_11140Not AvailableNegative2283835 - 228482135293.8
peptide deformylaseD104_11145Not AvailableNegative2284905 - 228545020889.3
dna processing protein dpraD104_11150Not AvailablePositive2285673 - 228696847382.4
ribosome-associated heat shock protein hsp15D104_11155Not AvailableNegative2287063 - 228748215711.8
3'-5'-bisphosphate nucleotidaseD104_11160Not AvailablePositive2287527 - 228836630935.0
tetr family transcriptional regulatorD104_11165Not AvailableNegative2288446 - 228903622025.2
3-oxoacyl-acp synthaseD104_11170Not AvailablePositive2289176 - 229044443822.3
c4-dicarboxylate abc transporter permeaseD104_11175Not AvailableNegative2290524 - 229184647051.9
c4-dicarboxylate abc transporter permeaseD104_11180Not AvailableNegative2291839 - 229239621447.4

Displaying genes 2201 – 2210 of 3647 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.