Marinomonas profundimaris str. D104

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Oceanospirillaceae

Genus

Marinomonas

Description

Marinomonas profundimaris str. D104 is a marine bacterium characterized by a single replicon, which is a notable trait in its genomic structure. The genome of this strain is represented in the database under the accession number AYOZ00000000.1, providing a reference point for researchers interested in its genetic and functional attributes. As a member of the Marinomonas genus, Marinomonas profundimaris str. D104 is positioned within a group of bacteria known for their association with marine environments. This ecological niche suggests that the species may play a role in marine biogeochemical cycles, potentially influencing nutrient dynamics in ocean ecosystems. The presence of a single replicon indicates a streamlined genomic organization, which could be advantageous for adaptability and survival in fluctuating marine conditions. Given its marine origin, Marinomonas profundimaris str. D104 may also be involved in interactions with other marine microorganisms, contributing to the complexity of microbial communities in the ocean. Understanding this strain's specific roles and functions could provide insights into the ecological balance and health of marine ecosystems. Overall, the genomic characteristics and environmental associations of Marinomonas profundimaris str. D104 underscore its potential significance in marine microbiology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyOceanospirillaceae
GenusMarinomonas
SpeciesMarinomonas profundimaris
StrainD104

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Marinomonas profundimaris strain D104 contig9, whole genome

Gene Summary

Adenine Count

1062876 bp

Thymine Count

1053647 bp

Guanine Count

849280 bp

Cytosine Count

867566 bp

Genome Length

3833369 bp

Protein-coding Genes

3576 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenine glycosylaseD104_07475Not AvailableNegative1534280 - 153532939444.3
membrane assembly protein asmaD104_07480Not AvailableNegative1535368 - 153764182101.7
imidazoleglycerol-phosphate dehydrataseD104_07485Not AvailablePositive1537906 - 153849921742.1
imidazole glycerol phosphate synthaseD104_07490Not AvailablePositive1538512 - 153918324562.3
imidazole glycerol phosphate synthaseD104_07495Not AvailablePositive1539247 - 154002027625.0
glutamate--cysteine ligaseD104_07500Not AvailablePositive1540233 - 154182560308.2
gtp-binding protein ysxcD104_07505Not AvailableNegative1541897 - 154254123950.3
thiol:disulfide interchange protein dsbaD104_07510Not AvailablePositive1542863 - 154348323208.5
diguanylate cyclaseD104_07515Not AvailablePositive1543500 - 154503257498.9
ubiquinone/menaquinone biosynthesis methyltransferaseD104_07520Not AvailablePositive1545170 - 154592527763.4

Displaying genes 1481 – 1490 of 3647 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.