Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas sp. UW4 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere of common reeds |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Brassica napus, Medicago lupulina |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1236535 bp
Thymine Count
1233428 bp
Guanine Count
1854724 bp
Cytosine Count
1858701 bp
Genome Length
6183388 bp
Protein-coding Genes
5507 genes
Non-Coding Genes
98 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxygen-dependent coproporphyrinogen oxidase | PPUTUW4_RS00105 | Q3KKE0 | Positive | 22007 - 22921 | 34562.3 |
| shikimate dehydrogenase | PPUTUW4_RS00110 | A4XNB9 | Positive | 22935 - 23756 | 29188.0 |
| sulp family inorganic anion transporter | PPUTUW4_RS00115 | Q8GYH8 | Negative | 23847 - 25415 | 56322.1 |
| choline abc transporter substrate-binding protein | PPUTUW4_RS00120 | Q9L4K3 | Negative | 25561 - 26481 | 33348.0 |
| choline-sulfatase | PPUTUW4_RS00125 | O69787 | Negative | 26498 - 28012 | 57106.7 |
| choline sulfate utilization transcriptional regulator | PPUTUW4_RS00130 | Not Available | Positive | 28127 - 29077 | 35169.3 |
| nad(p)-dependent oxidoreductase | PPUTUW4_RS00135 | Not Available | Negative | 29125 - 29790 | 23722.7 |
| dopa 4,5-dioxygenase family protein | PPUTUW4_RS00140 | Not Available | Positive | 29874 - 30200 | 12181.6 |
| gfa family protein | PPUTUW4_RS00145 | Not Available | Negative | 30201 - 30602 | 14673.3 |
| citmhs family transporter | PPUTUW4_RS00150 | Not Available | Positive | 31020 - 32327 | 46376.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.




