Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas sp. UW4 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere of common reeds |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Brassica napus, Medicago lupulina |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1236535 bp
Thymine Count
1233428 bp
Guanine Count
1854724 bp
Cytosine Count
1858701 bp
Genome Length
6183388 bp
Protein-coding Genes
5507 genes
Non-Coding Genes
98 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hlyd family secretion protein | PPUTUW4_RS00650 | P0DPR6 | Positive | 142912 - 143976 | 37382.9 |
| efflux transporter outer membrane subunit | PPUTUW4_RS00655 | O31101 | Positive | 143973 - 145520 | 56251.3 |
| slipin family protein | PPUTUW4_RS00660 | O28852 | Negative | 145656 - 146414 | 28049.7 |
| nfed family protein | PPUTUW4_RS00665 | Not Available | Negative | 146417 - 146950 | 18166.7 |
| aminoacyl-trna deacylase | PPUTUW4_RS00670 | Not Available | Positive | 147150 - 147611 | 17174.6 |
| duf2789 domain-containing protein | PPUTUW4_RS00675 | Not Available | Positive | 147750 - 147995 | 9142.79 |
| type ii toxin-antitoxin system prevent-host-death family antitoxin | PPUTUW4_RS00680 | Not Available | Positive | 148078 - 148323 | 8896.82 |
| type ii toxin-antitoxin system rele/pare family toxin | PPUTUW4_RS00685 | P0C077 | Positive | 148313 - 148594 | 11083.5 |
| marr family winged helix-turn-helix transcriptional regulator | PPUTUW4_RS00690 | Not Available | Positive | 148727 - 149155 | 15434.8 |
| fusc family protein | PPUTUW4_RS00695 | O05543 | Positive | 149152 - 151224 | 76541.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.




