Sphingobium sp. C100

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. C100 is a noteworthy bacterium characterized by the presence of flagella, which suggests motility in its ecological niche. This trait may facilitate its movement towards nutrients or away from unfavorable conditions, enhancing its survival and adaptability. The genome of Sphingobium sp. C100 contains a single replicon, indicating a streamlined genetic architecture that is often associated with efficient replication and regulation of metabolic processes. This single replicon structure may also contribute to its ability to respond quickly to environmental changes, a trait beneficial for survival in diverse habitats. The bacterium is identified under the accession AYOY00000000.1, which provides a reference point for genomic studies and further research. This accession number allows researchers to access its genetic information for comparative analysis with other strains or species within the Sphingobium genus. In terms of ecological significance, the motility conferred by its flagella and the efficient genetic structure may enable Sphingobium sp. C100 to thrive in various environments, potentially including contaminated sites where it may play a role in bioremediation. Its ability to navigate and adapt could make it a candidate for further studies on its role in ecosystem dynamics and pollutant degradation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. C100
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. C100 contig99, whole genome shotgun sequence.

Gene Summary

Adenine Count

864363 bp

Thymine Count

860180 bp

Guanine Count

1517885 bp

Cytosine Count

1534382 bp

Genome Length

4776810 bp

Protein-coding Genes

4496 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conjugal transfer protein trbjC100_20850Not AvailablePositive4186479 - 418725227704.7
conjugal transfer protein trbkC100_20855Not AvailablePositive4187263 - 418762512819.2
conjugal transfer protein trblC100_20860Not AvailablePositive4187630 - 418856031611.0
molecular chaperone dnajC100_20865Not AvailableNegative4188561 - 418904016394.8
pyridoxamine 5'-phosphate oxidaseC100_20870Not AvailablePositive4189181 - 418975622084.9
c4-dicarboxylate abc transporterC100_20875Not AvailablePositive4189937 - 419126847670.4
membrane proteinC100_20880Not AvailableNegative4191289 - 419218533476.0
proton glutamate symport proteinC100_20885Not AvailablePositive4192318 - 419364946745.8
hypothetical proteinC100_20890Not AvailableNegative4193636 - 41938186784.35
adenylosuccinate synthetaseC100_20895Not AvailableNegative4193824 - 419511346343.2

Displaying genes 4011 – 4020 of 4575 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm0004394zeaxanthin bis(beta-D-glucoside)C52H76O12Chemical structure of zeaxanthin bis(beta-D-glucoside)Not available
Average893.168Da
Monoisotopic892.5336779Da
BASm00068103-(methylsulfanyl)propanoyl-CoAC25H38N7O17P3S2Chemical structure of 3-(methylsulfanyl)propanoyl-CoANot available
Average865.65Da
Monoisotopic865.1000405Da
BASm00072473-(methylsulfanyl)acryloyl-CoAC25H36N7O17P3S2Chemical structure of 3-(methylsulfanyl)acryloyl-CoANot available
Average863.64Da
Monoisotopic863.0843904Da
BASm0008659propionate 3-nitronateC3H4NO4Chemical structure of propionate 3-nitronateNot available
Average118.069Da
Monoisotopic118.0145812Da
BASm0010884(7R,8S)-7,8-diammoniononanoateC9H21N2O2Chemical structure of (7R,8S)-7,8-diammoniononanoateNot available
Average189.278Da
Monoisotopic189.1597543Da

Displaying 1–10 of 11 metabolites

Health Effects

No health effects information available for this bacterium.