Rubrivirga marina str. SAORIC-28

Kingdom

Pseudomonadati

Phylum

Rhodothermota

Class

Rhodothermia

Order

Rhodothermales

Family

Rubricoccaceae

Genus

Rubrivirga

Description

Rubrivirga marina str. SAORIC-28 is a marine bacterium characterized by having a single replicon. This trait indicates that its genomic structure is likely organized into a single circular chromosome, which is typical for many bacterial species. The organism is cataloged under the accession number MQWD00000000.1, which allows for its genetic information to be accessed and studied in databases. The classification of Rubrivirga marina suggests that it is part of a broader group of bacteria that inhabit marine environments. While specific ecological roles are not detailed, marine bacteria generally play critical roles in nutrient cycling, organic matter degradation, and the overall health of marine ecosystems. The presence of Rubrivirga marina in marine habitats may indicate its involvement in these essential processes. The single-replicon structure may confer certain advantages, such as streamlined replication and maintenance of genetic integrity, which could be beneficial in the dynamic and competitive marine environment. Understanding the genomic characteristics of Rubrivirga marina str. SAORIC-28 could provide insights into its evolutionary adaptations and functional capabilities in marine ecosystems. Further research is warranted to explore its ecological roles and interactions within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumRhodothermota
ClassRhodothermia
OrderRhodothermales
FamilyRubricoccaceae
GenusRubrivirga
SpeciesRubrivirga marina
StrainSAORIC-28

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubrivirga marina strain SAORIC-28 scaffold13_cov203_read148,

Gene Summary

Adenine Count

685458 bp

Thymine Count

685562 bp

Guanine Count

1796169 bp

Cytosine Count

1810553 bp

Genome Length

4981075 bp

Protein-coding Genes

4172 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
malate dehydrogenaseBSZ37_16820Not AvailablePositive3938812 - 393975033063.9
magnesium and cobalt transport protein coraBSZ37_16825Not AvailablePositive3939898 - 394101642218.9
hypothetical proteinBSZ37_16830Not AvailablePositive3941097 - 394328977382.1
hypothetical proteinBSZ37_16835Not AvailableNegative3943303 - 394361710960.7
hypothetical proteinBSZ37_16840Not AvailablePositive3943752 - 394427619414.4
isopentenyl-diphosphate delta-isomeraseBSZ37_16845Not AvailablePositive3944312 - 394486020744.4
hypothetical proteinBSZ37_16850Not AvailablePositive3944915 - 39451819555.7
hypothetical proteinBSZ37_16855Not AvailablePositive3945271 - 394639839702.8
hypothetical proteinBSZ37_16860Not AvailablePositive3946395 - 394715027711.0
d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidaseBSZ37_16865Not AvailablePositive3947264 - 394873051656.6

Displaying genes 3321 – 3330 of 4225 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.