Porphyromonas gingivalis JCVI SC001

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Porphyromonas

Description

Porphyromonas gingivalis JCVI SC001 is a Gram-negative, rod-shaped bacterium that is primarily associated with host environments, indicating its role as an opportunistic pathogen in humans. It is classified as an anaerobe, meaning it requires low oxygen levels for survival and growth, thriving optimally at a temperature of 37°C, which aligns with the human body temperature. This organism is mesophilic, with a temperature range that supports growth in moderate thermal conditions. P. gingivalis JCVI SC001 is non-motile and possesses flagella, although its mobility is limited. The bacterium has two replicons and two membranes, consistent with its Gram-negative classification. Notably, it is a free-living organism that does not undergo sporulation, which influences its survival strategies and ecological interactions. With accessions APMB00000000.1 and NZ_CM001843.1, P. gingivalis JCVI SC001 is well-documented within microbial databases, providing valuable genetic information for further studies. This organism is significant in the context of periodontal disease, where it contributes to the dysbiosis of oral microbiota. Its ability to thrive in anaerobic conditions and its association with host tissues highlight its ecological role as a pathogenic bacterium in the oral cavity, leading to inflammation and tissue destruction. Understanding the characteristics and behaviors of P. gingivalis JCVI SC001 can enhance insights into microbial-host interactions and the development of targeted therapies for periodontal diseases.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPorphyromonadaceae
GenusPorphyromonas
SpeciesPorphyromonas gingivalis
StrainJCVI SC001

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Porphyromonas gingivalis JCVI SC001
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyromonas gingivalis JCVI SC001 ctgN653L496C34.3197, whole

Gene Summary

Adenine Count

620174 bp

Thymine Count

619560 bp

Guanine Count

578825 bp

Cytosine Count

579637 bp

Genome Length

2398196 bp

Protein-coding Genes

2354 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pf11307 family proteinA343_1013Not AvailableNegative426748 - 42733222223.6
oligopeptide abc transporter, oligopeptide-binding proteinA343_1015Not AvailablePositive427914 - 42908945225.1
iron chelate uptake abc transporter, fect family, permease proteinA343_1016Not AvailablePositive429086 - 43012036938.4
abc transporter, atp-binding proteinA343_1017Not AvailablePositive430128 - 43112936680.5
adenosylcobinamide amidohydrolaseA343_1018Not AvailablePositive431153 - 43231642162.5
tonb-dependent heme/hemoglobin receptor family proteinA343_1020Not AvailablePositive432330 - 43445078561.2
hypothetical proteinA343_1019Not AvailableNegative434447 - 4345875101.31
hypothetical proteinA343_1021Not AvailablePositive434658 - 4347774681.68
phenylalanine--trna ligase, beta subunitA343_0874Not AvailablePositive435258 - 43771791415.4
dna-binding regulatory protein, yebc/pmpr familyA343_0875Not AvailablePositive437760 - 43848827951.7

Displaying genes 441 – 450 of 4493 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.