Vibrio genomosp. F6 str. FF-238

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio genomosp. F6 strain FF-238 is characterized by having a single replicon, which indicates a streamlined genetic structure that can be advantageous for its adaptability and survival in various environments. The strain is cataloged under the accession number AJYW00000000.2, which provides a reference for researchers seeking to access its genomic information. As a member of the Vibrio genus, this strain may be associated with aquatic environments, as many Vibrio species are known to inhabit marine and estuarine ecosystems. The ecological significance of Vibrio species often relates to their roles in nutrient cycling and their interactions with other microorganisms and marine organisms. Understanding the genetic makeup and replicon structure of Vibrio genomosp. F6 strain FF-238 can offer insights into its potential ecological roles and adaptability. The single replicon may reflect a specialization that allows this strain to thrive in specific niches within its habitat. Further research could elucidate its interactions within aquatic ecosystems, potentially revealing its role in microbial communities and its impact on environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio genomosp. F6
StrainFF-238

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio genomosp. F6 str. FF-238
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio genomosp. F6 str. FF-238 FF-238_contig_98, whole genome

Gene Summary

Adenine Count

1227601 bp

Thymine Count

1219631 bp

Guanine Count

887662 bp

Cytosine Count

904455 bp

Genome Length

4239624 bp

Protein-coding Genes

3639 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peroxidaseA130_05100Q8K9W0Negative2649367 - 264997522164.2
lysr family transcriptional regulatorA130_05105P52667Positive2650161 - 265106633483.5
malate synthase aA130_05110P08997Positive2651636 - 265327361702.4
isocitrate lyaseA130_05115P51066Positive2653452 - 265476248013.3
chemotaxis proteinA130_05120Not AvailableNegative2654943 - 265688370336.1
acetoin utilization protein acubA130_05125P39066Negative2657189 - 265764716960.4
serine proteaseA130_05130Q8I6K0Positive2657897 - 265908443394.2
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaA130_05135B7VJR7Positive2659251 - 266030339105.5
trna guanosine(34) transglycosylase tgtA130_05140Q5E3D2Positive2660485 - 266161542925.2
preprotein translocase subunit yajcA130_05145P0ADZ9Positive2661740 - 266206911786.6

Displaying genes 2281 – 2290 of 3680 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

189 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da

Displaying 1–10 of 189 metabolites

Health Effects

No health effects information available for this bacterium.