Indibacter alkaliphilus LW1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Indibacter

Description

Indibacter alkaliphilus LW1 is a Gram-negative bacterium characterized by its rod shape and aerobic growth requirements. It is non-motile, which indicates that it does not possess the means for active movement, relying instead on passive dispersal for colonization. This organism thrives optimally at a temperature of 32°C, placing it within the mesophilic range, which typically spans from 20°C to 45°C. The genetic makeup of Indibacter alkaliphilus LW1 includes a single replicon, which suggests a streamlined genomic structure. The bacterium has been cataloged with the accession number ALWO00000000.2, facilitating its identification within genomic databases. From an ecological perspective, the traits of Indibacter alkaliphilus LW1 suggest its potential role in alkaline environments, possibly contributing to biogeochemical cycling in such habitats. Its aerobic nature indicates that it may play a part in the degradation of organic matter in oxygen-rich environments, further supporting ecosystem functions. Understanding the specific ecological niches occupied by organisms like Indibacter alkaliphilus LW1 can provide insights into microbial diversity and the functioning of alkaline ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusIndibacter
SpeciesIndibacter alkaliphilus
StrainLW1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Indibacter alkaliphilus LW1


Gene Summary

Adenine Count

1522514 bp

Thymine Count

1515338 bp

Guanine Count

992787 bp

Cytosine Count

1005359 bp

Genome Length

5036047 bp

Protein-coding Genes

4656 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Small subunit ribosomal rnaNot AvailableNot AvailablePositive19 - 1535Not Available
Large subunit ribosomal rnaNot AvailableNot AvailablePositive30 - 2959Not Available
transposaseA33Q_0001Not AvailableNegative6 - 92635705.2
serine alkaline protease (subtilisin e)A33Q_0002Not AvailablePositive1464 - 294552308.8
5s ribosomal rnaNot AvailableNot AvailablePositive3126 - 3237Not Available
deblocking aminopeptidaseA33Q_0003Not AvailableNegative3113 - 416538694.9
amidophosphoribosyltransferaseA33Q_0004Not AvailableNegative4461 - 634471950.4
hnh endonuclease family proteinA33Q_0005Not AvailableNegative6477 - 699219553.8
tmrna-binding protein smpbA33Q_0006Not AvailableNegative7047 - 751418103.4
tsad/kae1/qri7 protein, required for threonylcarbamoyladenosine t(6)a37 formation in trnaA33Q_0007Not AvailableNegative7876 - 888036358.2

Displaying genes 1 – 10 of 4703 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

10 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm00035853''-O-adenylylstreptomycinC31H53N12O18PChemical structure of 3''-O-adenylylstreptomycinNot available
Average912.804Da
Monoisotopic912.332742753Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0010806spectinomycinC14H24N2O7Chemical structure of spectinomycinNot available
Average332.353Da
Monoisotopic332.1583511Da
BASm00108079-O-adenylylspectinomycinC24H36N7O13PChemical structure of 9-O-adenylylspectinomycinNot available
Average661.562Da
Monoisotopic661.2108712Da

Displaying 1–10 of 10 metabolites

Health Effects

No health effects information available for this bacterium.