Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cyclobacteriaceae
Genus
Indibacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cyclobacteriaceae |
| Genus | Indibacter |
| Species | Indibacter alkaliphilus |
| Strain | LW1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1522514 bp
Thymine Count
1515338 bp
Guanine Count
992787 bp
Cytosine Count
1005359 bp
Genome Length
5036047 bp
Protein-coding Genes
4656 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase, trmh family | A33Q_1203 | Not Available | Positive | 1214758 - 1215501 | 27718.2 |
| sodium/bile acid symporter family | A33Q_1204 | Not Available | Positive | 1215513 - 1216505 | 36596.1 |
| hypothetical protein | A33Q_1205 | Not Available | Negative | 1216511 - 1217476 | 37573.7 |
| internalin, putative | A33Q_1206 | Not Available | Negative | 1217749 - 1219272 | 56168.9 |
| hypothetical protein | A33Q_1207 | Not Available | Positive | 1219706 - 1220092 | 14661.9 |
| hypothetical protein | A33Q_1208 | Not Available | Negative | 1220240 - 1220797 | 21562.0 |
| sensor histidine kinase involved in nitrogen fixation and metabolism regulation | A33Q_1209 | Not Available | Negative | 1220810 - 1222165 | 50908.2 |
| putative two-component response regulator transcriptional regulatory protein | A33Q_1210 | Not Available | Negative | 1222155 - 1223543 | 52641.6 |
| hypothetical protein | A33Q_1211 | Not Available | Positive | 1223559 - 1223750 | 7487.97 |
| putative co/zn/cd efflux system membrane fusion protein | A33Q_1212 | Not Available | Positive | 1223940 - 1225190 | 47482.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
