Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cyclobacteriaceae
Genus
Indibacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cyclobacteriaceae |
| Genus | Indibacter |
| Species | Indibacter alkaliphilus |
| Strain | LW1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1522514 bp
Thymine Count
1515338 bp
Guanine Count
992787 bp
Cytosine Count
1005359 bp
Genome Length
5036047 bp
Protein-coding Genes
4656 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Small subunit ribosomal rna | Not Available | Not Available | + | 19 - 1535 | Not Available |
| Large subunit ribosomal rna | Not Available | Not Available | + | 30 - 2959 | Not Available |
| transposase | A33Q_0001 | Not Available | - | 6 - 926 | 35705.2 |
| serine alkaline protease (subtilisin e) | A33Q_0002 | Not Available | + | 1464 - 2945 | 52308.8 |
| 5s ribosomal rna | Not Available | Not Available | + | 3126 - 3237 | Not Available |
| deblocking aminopeptidase | A33Q_0003 | Not Available | - | 3113 - 4165 | 38694.9 |
| amidophosphoribosyltransferase | A33Q_0004 | Not Available | - | 4461 - 6344 | 71950.4 |
| hnh endonuclease family protein | A33Q_0005 | Not Available | - | 6477 - 6992 | 19553.8 |
| tmrna-binding protein smpb | A33Q_0006 | Not Available | - | 7047 - 7514 | 18103.4 |
| tsad/kae1/qri7 protein, required for threonylcarbamoyladenosine t(6)a37 formation in trna | A33Q_0007 | Not Available | - | 7876 - 8880 | 36358.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
