Fibrisoma limi BUZ 3

aerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Fibrisoma

Description

Fibrisoma limi BUZ 3 is an aerobic bacterium characterized by its requirement for oxygen to thrive. This organism possesses a total of four replicons, which indicates a complex genomic organization possibly linked to its functional versatility and adaptability in aerobic environments. The genomic data for Fibrisoma limi BUZ 3 is represented in several accessions, including CAIT00000000.1, NC_019016.1, NC_019017.1, and NC_019015.1, providing a foundation for further genetic and functional studies. The aerobic nature of Fibrisoma limi suggests that it may play a significant role in environments where oxygen is present, potentially contributing to biogeochemical cycles and the degradation of organic materials. Its multiple replicons could also imply a capacity for genetic exchange or adaptability, which might enhance its survival in fluctuating environmental conditions. In summary, the traits of Fibrisoma limi BUZ 3 highlight its aerobic lifestyle and complex genomic structure, which could be pivotal in understanding its ecological role and potential applications in biotechnology or environmental microbiology. Further research into this bacterium may reveal its specific interactions within ecosystems and its applications in bioremediation or other microbial processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusFibrisoma
SpeciesFibrisoma limi
StrainBUZ 3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Fibrisoma limi BUZ 3


Gene Summary

Adenine Count

1761279 bp

Thymine Count

1757438 bp

Guanine Count

1964907 bp

Cytosine Count

1968702 bp

Genome Length

7452326 bp

Protein-coding Genes

6181 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaBN8_00001Q8KGG6Positive75 - 146953021.5
hypothetical proteinBN8_00002Not AvailablePositive1662 - 251632244.8
hypothetical proteinBN8_00003Not AvailableNegative2502 - 329030206.3
aminopeptidaseBN8_00004Not AvailableNegative3320 - 436640134.2
peptidase s8 and s53 subtilisin kexin sedolisinBN8_00005Not AvailablePositive4696 - 674475496.0
acetyltransferaseBN8_00006Not AvailableNegative6821 - 738421322.3
mandelate racemase/muconate lactonizing proteinBN8_00007Q11T61Negative7387 - 848739898.8
amidohydrolase 2BN8_00008Not AvailableNegative8581 - 970843160.7
2c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseBN8_00009Q11Q93Negative9723 - 1020217447.3
peptidase m16 domain proteinBN8_00011P55679Negative10390 - 1209064419.8

Displaying genes 1 – 10 of 6394 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

284 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da

Displaying 1–10 of 284 metabolites

Health Effects

No health effects information available for this bacterium.