Fibrisoma limi BUZ 3

aerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Fibrisoma

Description

Fibrisoma limi BUZ 3 is an aerobic bacterium characterized by its requirement for oxygen to thrive. This organism possesses a total of four replicons, which indicates a complex genomic organization possibly linked to its functional versatility and adaptability in aerobic environments. The genomic data for Fibrisoma limi BUZ 3 is represented in several accessions, including CAIT00000000.1, NC_019016.1, NC_019017.1, and NC_019015.1, providing a foundation for further genetic and functional studies. The aerobic nature of Fibrisoma limi suggests that it may play a significant role in environments where oxygen is present, potentially contributing to biogeochemical cycles and the degradation of organic materials. Its multiple replicons could also imply a capacity for genetic exchange or adaptability, which might enhance its survival in fluctuating environmental conditions. In summary, the traits of Fibrisoma limi BUZ 3 highlight its aerobic lifestyle and complex genomic structure, which could be pivotal in understanding its ecological role and potential applications in biotechnology or environmental microbiology. Further research into this bacterium may reveal its specific interactions within ecosystems and its applications in bioremediation or other microbial processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusFibrisoma
SpeciesFibrisoma limi
StrainBUZ 3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Fibrisoma limi BUZ 3 WGS project CAIT00000000 data, contig 11,

Gene Summary

Adenine Count

1761279 bp

Thymine Count

1757438 bp

Guanine Count

1964907 bp

Cytosine Count

1968702 bp

Genome Length

7452326 bp

Protein-coding Genes

6181 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioesterase superfamily proteinBN8_00288P0A0Q8Negative327117 - 32772521993.7
iron-sulfur cluster assembly accessory proteinBN8_00289A1WVE3Negative327770 - 32809611733.0
methylmalonyl-coa epimeraseBN8_00290O58010Positive328177 - 32858414952.0
smc domain proteinBN8_00291Not AvailablePositive328655 - 32975842036.2
hypothetical proteinBN8_00292Not AvailablePositive329755 - 33037223871.6
cystathionine beta-synthaseBN8_00293P9WP50Positive330375 - 33175150477.1
ribosome small subunit-dependent gtpase aBN8_00294Q5LHL3Negative331842 - 33276834392.9
three-deoxy-d-manno-octulosonic-acid transferase domain proteinBN8_00295Not AvailableNegative332838 - 33413649456.1
hypothetical proteinBN8_00296Not AvailablePositive334059 - 33449616582.7
hypothetical proteinBN8_00297Not AvailablePositive334552 - 33488112375.6

Displaying genes 271 – 280 of 6394 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

284 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da

Displaying 1–10 of 284 metabolites

Health Effects

No health effects information available for this bacterium.