Agrobacterium tomkonis CFBP 6623 str. CFBP 6623

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tomkonis CFBP 6623 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This species is part of the Agrobacterium genus, known for its role in plant interactions and genetic transformation. CFBP 6623 contains a single replicon, indicating a streamlined genomic organization. The accession number for this strain is FBWK00000000.1, which serves as a reference for its genetic information. The ecological role of Agrobacterium species, including CFBP 6623, is significant in the context of plant microbiomes. These bacteria are often associated with plant roots and can engage in beneficial interactions, such as promoting plant growth or contributing to nutrient cycling. The presence of flagella suggests an adaptation to diverse environments, enabling the bacterium to navigate toward favorable conditions, particularly in the rhizosphere. In summary, Agrobacterium tomkonis CFBP 6623 exemplifies key microbial traits that enable its survival and interaction with plant hosts, contributing to its ecological significance within soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tomkonis
StrainCFBP 6623 CFBP 6623

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium tomkonis CFBP 6623 str. CFBP 6623
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 3 str. CFBP 6623 genome assembly, contig:

Gene Summary

Adenine Count

1115388 bp

Thymine Count

1127456 bp

Guanine Count

1637206 bp

Cytosine Count

1616654 bp

Genome Length

5496704 bp

Protein-coding Genes

5297 genes

Non-Coding Genes

197 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative transcriptional regulatorAGR3A_Cc170029Not AvailableNegative495479 - 49591015937.3
putative short-chain oxidoreductaseAGR3A_Cc170030Not AvailablePositive496000 - 49681529591.7
zn-dependent oxidoreductase, nadph:quinone reductaseAGR3A_Cc170031Not AvailablePositive496859 - 49786036318.4
hemy domain protein (fragment)AGR3A_Cc170032Not AvailableNegative497934 - 4981406930.85
protein mrazAGR3A_Cc170033Not AvailablePositive498481 - 49892116129.3
s-adenosyl-dependent methyl transferaseAGR3A_Cc170034Not AvailablePositive498936 - 49996136247.5
conserved hypothetical proteinAGR3A_Cc170035Not AvailablePositive499963 - 50051719643.7
division-specific transpeptidase, penicillin-binding proteinAGR3A_Cc170036Not AvailablePositive500517 - 50225962910.6
udp-n-acetylmuramoylalanyl-d-glutamate 2,6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase)AGR3A_Cc170037Not AvailablePositive502319 - 50377950991.0
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseAGR3A_Cc170038Not AvailablePositive503803 - 50520949675.8

Displaying genes 661 – 670 of 1625 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.