Agrobacterium tomkonis CFBP 6623 str. CFBP 6623

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tomkonis CFBP 6623 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This species is part of the Agrobacterium genus, known for its role in plant interactions and genetic transformation. CFBP 6623 contains a single replicon, indicating a streamlined genomic organization. The accession number for this strain is FBWK00000000.1, which serves as a reference for its genetic information. The ecological role of Agrobacterium species, including CFBP 6623, is significant in the context of plant microbiomes. These bacteria are often associated with plant roots and can engage in beneficial interactions, such as promoting plant growth or contributing to nutrient cycling. The presence of flagella suggests an adaptation to diverse environments, enabling the bacterium to navigate toward favorable conditions, particularly in the rhizosphere. In summary, Agrobacterium tomkonis CFBP 6623 exemplifies key microbial traits that enable its survival and interaction with plant hosts, contributing to its ecological significance within soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tomkonis
StrainCFBP 6623 CFBP 6623

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium tomkonis CFBP 6623 str. CFBP 6623
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 3 str. CFBP 6623 genome assembly, contig:

Gene Summary

Adenine Count

1115388 bp

Thymine Count

1127456 bp

Guanine Count

1637206 bp

Cytosine Count

1616654 bp

Genome Length

5496704 bp

Protein-coding Genes

5297 genes

Non-Coding Genes

197 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conserved hypothetical proteinAGR3A_Cc170019Not AvailableNegative485051 - 48630147103.3
lytic murein transglycosylaseAGR3A_Cc170020Not AvailableNegative486608 - 48769336841.9
conserved hypothetical proteinAGR3A_Cc170021Not AvailableNegative487819 - 48845422297.5
pyrophosphate--fructose 6-phosphate 1-phosphotransferaseAGR3A_Cc170022Not AvailableNegative488506 - 48971743243.5
hypothetical proteinAGR3A_Cc170023Not AvailableNegative489717 - 4899629546.49
dnaj family molecular chaperoneAGR3A_Cc170024Not AvailablePositive490037 - 49078927797.3
putative 1:n-acetylmuramoyl-l-alanine amidase (family 2) with peptidoglycan binding domainAGR3A_Cc170025Not AvailablePositive490786 - 49156528355.5
soluble lytic transglycosylaseAGR3A_Cc170026Not AvailablePositive491852 - 49235218087.9
sarcosine oxidaseAGR3A_Cc170027Not AvailablePositive492505 - 49369241792.7
sarcosine oxidaseAGR3A_Cc170028Not AvailablePositive493752 - 49494242176.9

Displaying genes 651 – 660 of 1625 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.