Agrobacterium tomkonis CFBP 6623 str. CFBP 6623

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tomkonis CFBP 6623 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This species is part of the Agrobacterium genus, known for its role in plant interactions and genetic transformation. CFBP 6623 contains a single replicon, indicating a streamlined genomic organization. The accession number for this strain is FBWK00000000.1, which serves as a reference for its genetic information. The ecological role of Agrobacterium species, including CFBP 6623, is significant in the context of plant microbiomes. These bacteria are often associated with plant roots and can engage in beneficial interactions, such as promoting plant growth or contributing to nutrient cycling. The presence of flagella suggests an adaptation to diverse environments, enabling the bacterium to navigate toward favorable conditions, particularly in the rhizosphere. In summary, Agrobacterium tomkonis CFBP 6623 exemplifies key microbial traits that enable its survival and interaction with plant hosts, contributing to its ecological significance within soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tomkonis
StrainCFBP 6623 CFBP 6623

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium tomkonis CFBP 6623 str. CFBP 6623
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 3 str. CFBP 6623 genome assembly, contig:

Gene Summary

Adenine Count

1115388 bp

Thymine Count

1127456 bp

Guanine Count

1637206 bp

Cytosine Count

1616654 bp

Genome Length

5496704 bp

Protein-coding Genes

5297 genes

Non-Coding Genes

197 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xanthine dehydrogenaseAGR3A_Cc140008Not AvailableNegative280314 - 28178353270.5
d-beta-hydroxybutyrate dehydrogenase (bdh) (3-hydroxybutyrate dehydrogenase) (3-hbdh)AGR3A_Cc140009Not AvailableNegative281920 - 28269627465.1
putative oxidoreductase, llm familyAGR3A_Cc140010Not AvailablePositive282930 - 28399138648.3
methionine aminopeptidaseAGR3A_Cc140011Not AvailablePositive284046 - 28479827169.3
mfs permeaseAGR3A_Cc150001Not AvailablePositive285214 - 28640440902.8
transporter involved in cell envelope modificationAGR3A_Cc150002Not AvailablePositive286587 - 28786448879.6
conserved exported hypothetical proteinAGR3A_Cc150003Not AvailableNegative287920 - 28890336890.5
putative nitrate reductase proteinAGR3A_Cc150004Not AvailablePositive289055 - 28963921463.4
conserved hypothetical proteinAGR3A_Cc150005Not AvailablePositive289693 - 29046627344.2
gtp-binding protein, essential for cell growthAGR3A_Cc150006Not AvailablePositive290597 - 29203353140.6

Displaying genes 451 – 460 of 1625 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.