Agrobacterium tomkonis CFBP 6623 str. CFBP 6623

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tomkonis CFBP 6623 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This species is part of the Agrobacterium genus, known for its role in plant interactions and genetic transformation. CFBP 6623 contains a single replicon, indicating a streamlined genomic organization. The accession number for this strain is FBWK00000000.1, which serves as a reference for its genetic information. The ecological role of Agrobacterium species, including CFBP 6623, is significant in the context of plant microbiomes. These bacteria are often associated with plant roots and can engage in beneficial interactions, such as promoting plant growth or contributing to nutrient cycling. The presence of flagella suggests an adaptation to diverse environments, enabling the bacterium to navigate toward favorable conditions, particularly in the rhizosphere. In summary, Agrobacterium tomkonis CFBP 6623 exemplifies key microbial traits that enable its survival and interaction with plant hosts, contributing to its ecological significance within soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tomkonis
StrainCFBP 6623 CFBP 6623

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium tomkonis CFBP 6623 str. CFBP 6623
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 3 str. CFBP 6623 genome assembly, contig:

Gene Summary

Adenine Count

1115388 bp

Thymine Count

1127456 bp

Guanine Count

1637206 bp

Cytosine Count

1616654 bp

Genome Length

5496704 bp

Protein-coding Genes

5297 genes

Non-Coding Genes

197 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
metalloprotease proteinAGR3A_Cc20035Not AvailablePositive953549 - 95506354937.5
3-isopropylmalate dehydratase large subunit 2 (isopropylmalate isomerase 2) (alpha-ipm isomerase 2) (ipmi 2)AGR3A_Cc20036Not AvailableNegative955125 - 95653450931.5
putative tartrate transporterAGR3A_Cc20037Not AvailablePositive956937 - 95821446376.4
polar amino acid abc transporter inner membrane subunitAGR3A_Cc20038Not AvailableNegative958262 - 95909530447.2
periplasmic component of amino acid abc-type transporter/signal transduction systemAGR3A_Cc20039Not AvailableNegative959092 - 95988928708.4
50s ribosomal protein l19AGR3A_Cc20040Not AvailableNegative960015 - 96055419461.1
putative permeaseAGR3A_Cc20041Not AvailablePositive960822 - 96156825803.3
trna (guanine-n(1)-)-methyltransferaseAGR3A_Cc20042Not AvailableNegative961550 - 96224825205.2
16s rrna processing protein, putative functionAGR3A_Cc20043Not AvailableNegative962253 - 96281920198.7
30s ribosomal protein s16AGR3A_Cc20044Not AvailableNegative962941 - 96331813721.5

Displaying genes 1121 – 1130 of 1625 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.