Agrobacterium fabacearum S56 str. S56

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabacearum S56 str. S56 is a Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. Agrobacterium fabacearum S56 thrives optimally at a temperature of 25°C and is categorized as mesophilic, which means it can grow within a moderate temperature range. The bacterium has a unique cellular structure, featuring two membranes and a single replicon. It exists as a free-living organism, indicating that it does not rely on a host for survival, allowing it to inhabit multiple environments. This adaptability to various habitats may play a significant role in its ecological interactions, especially in soil and plant environments where it could contribute to nutrient cycling or potentially interact with plant species. Given its traits, Agrobacterium fabacearum S56 str. S56 may be particularly significant in agricultural contexts, as members of the Agrobacterium genus are known for their roles in plant-pathogen interactions. The bacterium's free-living nature suggests it may influence plant health and soil dynamics, highlighting the importance of understanding its ecological roles in diverse habitats. This knowledge could inform strategies for sustainable agriculture and microbiome management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabacearum S56 str. S56
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 1 str. S56 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5890 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleoside diphosphate kinase (ndk) (ndp kinase) (nucleoside-2-p kinase)AGR1B_Cc110031Not AvailableNegative641247 - 64166915335.3
lignin degradation proteinAGR1B_Cc110032Not AvailableNegative641773 - 64246825770.6
diguanylate-cyclaseAGR1B_Cc110033Not AvailablePositive642725 - 64377138087.5
putative abc transporter, atp-binding protein with duplicated atpase domainsAGR1B_Cc110034Not AvailablePositive643812 - 64572569650.4
ggdef family proteinAGR1B_Cc110035Not AvailableNegative645751 - 64768871555.2
galactose 1-dehydrogenaseAGR1B_Cc110036Not AvailablePositive648434 - 64936033782.1
putative diguanylate cyclase (ggdef domain)AGR1B_Cc110037Not AvailableNegative649403 - 65043137253.7
putative dna polymerase iii, chi subunit, holcAGR1B_Cc110038Not AvailableNegative650589 - 65103817240.1
putative cytosol aminopeptidase (leucine aminopeptidase) (lap) (leucyl aminopeptidase) pepaAGR1B_Cc110039Not AvailableNegative651064 - 65255752191.8
hypothetical proteinAGR1B_Cc110040Not AvailablePositive652486 - 6526385554.85

Displaying genes 691 – 700 of 2617 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.