Agrobacterium fabacearum S56 str. S56

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabacearum S56 str. S56 is a Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. Agrobacterium fabacearum S56 thrives optimally at a temperature of 25°C and is categorized as mesophilic, which means it can grow within a moderate temperature range. The bacterium has a unique cellular structure, featuring two membranes and a single replicon. It exists as a free-living organism, indicating that it does not rely on a host for survival, allowing it to inhabit multiple environments. This adaptability to various habitats may play a significant role in its ecological interactions, especially in soil and plant environments where it could contribute to nutrient cycling or potentially interact with plant species. Given its traits, Agrobacterium fabacearum S56 str. S56 may be particularly significant in agricultural contexts, as members of the Agrobacterium genus are known for their roles in plant-pathogen interactions. The bacterium's free-living nature suggests it may influence plant health and soil dynamics, highlighting the importance of understanding its ecological roles in diverse habitats. This knowledge could inform strategies for sustainable agriculture and microbiome management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabacearum S56 str. S56
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 1 str. S56 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5890 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative metallo-hydrolase/oxidoreductaseAGR1B_Cc140197Not AvailablePositive1911116 - 191223141497.8
diaminopimelate epimeraseAGR1B_Cc140198Not AvailablePositive1912353 - 191325532473.7
putative miab-like trna modifying enzymeAGR1B_Cc140199Not AvailablePositive1913252 - 191452646656.4
signal recognition particle receptor ftsyAGR1B_Cc140200Not AvailablePositive1914557 - 191598750107.4
putative intracellular septation protein (ispa/ispz family), putative membrane proteinAGR1B_Cc140201Not AvailablePositive1915990 - 191664024400.6
upf0314 protein atu8092AGR1B_Cc140202Not AvailablePositive1916637 - 191723322400.9
putative diguanylate cyclase (ggdef) proteinAGR1B_Cc140203Not AvailablePositive1917355 - 191854242964.7
periplasmic thioredoxin (cytochrome c biogenesis)AGR1B_Cc140204Not AvailableNegative1918561 - 191916621302.9
heme exporter protein dAGR1B_Cc140205Not AvailableNegative1919163 - 19193366237.68
heme abc transporter (heme exporter protein c), permease protein (cytochrome c biogenesis)AGR1B_Cc140206Not AvailableNegative1919341 - 192010228353.1

Displaying genes 1951 – 1960 of 2617 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.