Agrobacterium fabacearum S56 str. S56

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabacearum S56 str. S56 is a Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. Agrobacterium fabacearum S56 thrives optimally at a temperature of 25°C and is categorized as mesophilic, which means it can grow within a moderate temperature range. The bacterium has a unique cellular structure, featuring two membranes and a single replicon. It exists as a free-living organism, indicating that it does not rely on a host for survival, allowing it to inhabit multiple environments. This adaptability to various habitats may play a significant role in its ecological interactions, especially in soil and plant environments where it could contribute to nutrient cycling or potentially interact with plant species. Given its traits, Agrobacterium fabacearum S56 str. S56 may be particularly significant in agricultural contexts, as members of the Agrobacterium genus are known for their roles in plant-pathogen interactions. The bacterium's free-living nature suggests it may influence plant health and soil dynamics, highlighting the importance of understanding its ecological roles in diverse habitats. This knowledge could inform strategies for sustainable agriculture and microbiome management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabacearum S56 str. S56
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 1 str. S56 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5890 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna pseudouridine synthase b (trna pseudouridine 55 synthase) (psi55 synthase) (trna-uridine isomerase) (trna pseudouridylate synthase)AGR1B_Cc130149Not AvailablePositive1666342 - 166728934795.6
30s ribosomal subunit protein s15AGR1B_Cc130150Not AvailablePositive1667453 - 166772210066.1
polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (pnpase)AGR1B_Cc130151Not AvailablePositive1667993 - 167014077603.2
ribosomal rna small subunit methyltransferaseAGR1B_Cc130152Not AvailablePositive1670216 - 167123236833.0
permease, putative auxin efflux carrierAGR1B_Cc130153Not AvailableNegative1671248 - 167219233149.4
putative pfkb family carbohydrate kinaseAGR1B_Cc130154Not AvailablePositive1672725 - 167371735696.2
conserved hypothetical proteinAGR1B_Cc130155Not AvailableNegative1673710 - 167424919456.5
putative d-isomer specific 2-hydroxyacid dehydrogenases family proteinAGR1B_Cc130156Not AvailablePositive1674424 - 167542836924.0
gcn5-related n-acetyltransferaseAGR1B_Cc130157Not AvailableNegative1675508 - 167598417473.2
putative molybdopterin biosynthesis protein moebAGR1B_Cc130158Not AvailableNegative1675977 - 167674727273.9

Displaying genes 1731 – 1740 of 2617 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.