Agrobacterium fabacearum S56 str. S56

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabacearum S56 str. S56 is a Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. Agrobacterium fabacearum S56 thrives optimally at a temperature of 25°C and is categorized as mesophilic, which means it can grow within a moderate temperature range. The bacterium has a unique cellular structure, featuring two membranes and a single replicon. It exists as a free-living organism, indicating that it does not rely on a host for survival, allowing it to inhabit multiple environments. This adaptability to various habitats may play a significant role in its ecological interactions, especially in soil and plant environments where it could contribute to nutrient cycling or potentially interact with plant species. Given its traits, Agrobacterium fabacearum S56 str. S56 may be particularly significant in agricultural contexts, as members of the Agrobacterium genus are known for their roles in plant-pathogen interactions. The bacterium's free-living nature suggests it may influence plant health and soil dynamics, highlighting the importance of understanding its ecological roles in diverse habitats. This knowledge could inform strategies for sustainable agriculture and microbiome management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabacearum S56 str. S56
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 1 str. S56 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5890 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rnase phAGR1B_Cc120615Not AvailablePositive1436155 - 143687125992.2
putative ham1 proteinAGR1B_Cc120616Not AvailablePositive1436889 - 143753323069.0
putative oxygen-independent coproporphyrinogen iii oxidase (yggw)AGR1B_Cc120617Not AvailablePositive1437530 - 143873844577.9
chromosomal replication initiator protein dnaaAGR1B_Cc120618Not AvailableNegative1438813 - 144027654653.8
30s ribosomal protein s20AGR1B_Cc120619Not AvailableNegative1441148 - 14414149466.55
putative enoyl-coa hydrataseAGR1B_Cc120620Not AvailableNegative1441609 - 144240028187.1
bifunctional mutm protein:formamidopyrimidine-dna glycosylase (fapy-dna glycosylase)AGR1B_Cc120621Not AvailableNegative1442414 - 144331632984.6
ubiquinone/menaquinone biosynthesis methyltransferase ubieAGR1B_Cc120622Not AvailablePositive1443460 - 144423628735.3
ubiquinone biosynthesis protein ubibAGR1B_Cc120623Not AvailablePositive1444273 - 144584758163.8
sterol desaturaseAGR1B_Cc120624Not AvailablePositive1446011 - 144692534458.0

Displaying genes 1491 – 1500 of 2617 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.