Agrobacterium deltaense RV3

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium deltaense RV3 is a Gram-negative, rod-shaped bacterium. It is characterized by the presence of flagella, which likely contributes to its motility in various environments. This species has a single replicon, indicating a streamlined genomic structure that may influence its replication and adaptability. The accession number for Agrobacterium deltaense RV3 is FBWD00000000.1, which serves as a reference for genetic and genomic studies. This bacterium is part of a genus known for its role in plant interactions, particularly in relation to plant tumors caused by Agrobacterium tumefaciens. Although specific ecological roles of Agrobacterium deltaense RV3 are not detailed, its classification within the Agrobacterium genus suggests potential interactions with plant systems. The presence of flagella may facilitate its movement towards plant hosts or other environmental niches, where it could play a role in nutrient cycling or microbial community dynamics. Understanding the characteristics of Agrobacterium deltaense RV3 can provide insights into its ecological interactions and potential applications in biotechnology, particularly in areas related to agriculture and plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium deltae
Strainnse RV3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium deltaense RV3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 7 str. RV3 genome assembly, contig:

Gene Summary

Adenine Count

1065986 bp

Thymine Count

1057496 bp

Guanine Count

1563046 bp

Cytosine Count

1582641 bp

Genome Length

5269169 bp

Protein-coding Genes

5180 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-dehydro-3-deoxyphosphooctonate aldolase (3-deoxy-d-manno-octulosonic acid 8-phosphate synthetaseAGR7B_Cc70041Not AvailablePositive2659390 - 266023529972.1
enolase (2-phosphoglycerate dehydratase) (2-phospho-d-glycerate hydro-lyase)AGR7B_Cc70042Not AvailablePositive2660384 - 266165845057.6
conserved hypothetical proteinAGR7B_Cc70043Not AvailablePositive2661998 - 266231512448.1
pyruvate dehydrogenase e1 component, alpha subunitAGR7B_Cc70044Not AvailablePositive2662469 - 266351238120.3
pyruvate dehydrogenase e1 component, beta subunitAGR7B_Cc70045Not AvailablePositive2663530 - 266495150688.1
dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (e2) (dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)AGR7B_Cc70046Not AvailablePositive2664966 - 266633647277.9
arylesteraseAGR7B_Cc70047Not AvailablePositive2666349 - 266699322981.6
dihydrolipoyl dehydrogenase (e3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (dihydrolipoamide dehydrogenase)AGR7B_Cc70048Not AvailablePositive2667050 - 266849551181.5
conserved membrane hypothetical proteinAGR7B_Cc70049Not AvailablePositive2668595 - 26688438880.34
lipoyl synthase (lipoic acid synthase) (lipoate synthase) (lipoyl-acyl-carrier protein synthase) (sulfur insertion protein lipa) (lip-syn)AGR7B_Cc70050Not AvailablePositive2668947 - 266991836383.7

Displaying genes 2731 – 2740 of 2748 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.