Agrobacterium deltaense RV3

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium deltaense RV3 is a Gram-negative, rod-shaped bacterium. It is characterized by the presence of flagella, which likely contributes to its motility in various environments. This species has a single replicon, indicating a streamlined genomic structure that may influence its replication and adaptability. The accession number for Agrobacterium deltaense RV3 is FBWD00000000.1, which serves as a reference for genetic and genomic studies. This bacterium is part of a genus known for its role in plant interactions, particularly in relation to plant tumors caused by Agrobacterium tumefaciens. Although specific ecological roles of Agrobacterium deltaense RV3 are not detailed, its classification within the Agrobacterium genus suggests potential interactions with plant systems. The presence of flagella may facilitate its movement towards plant hosts or other environmental niches, where it could play a role in nutrient cycling or microbial community dynamics. Understanding the characteristics of Agrobacterium deltaense RV3 can provide insights into its ecological interactions and potential applications in biotechnology, particularly in areas related to agriculture and plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium deltae
Strainnse RV3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium deltaense RV3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium genomosp. 7 str. RV3 genome assembly, contig:

Gene Summary

Adenine Count

1065986 bp

Thymine Count

1057496 bp

Guanine Count

1563046 bp

Cytosine Count

1582641 bp

Genome Length

5269169 bp

Protein-coding Genes

5180 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylenolpyruvoylglucosamine reductase (murb-like)AGR7B_Cc160057Not AvailableNegative1034462 - 103542734789.7
udp-n-acetyl-muramate:alanine ligase, l-alanine adding enzymeAGR7B_Cc160058Not AvailableNegative1035424 - 103683950814.8
udp-n-acetylglucosamine:n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseAGR7B_Cc160059Not AvailableNegative1036836 - 103797239014.9
essential cell division protein (stabilizes ftsz ring)AGR7B_Cc160060Not AvailableNegative1037979 - 103913342415.1
udp-n-acetylmuramoylalanine-d-glutamate ligaseAGR7B_Cc160061Not AvailableNegative1039139 - 104054849097.4
phospho-n-acetylmuramoyl-pentapeptide transferaseAGR7B_Cc160062Not AvailableNegative1040552 - 104165239143.1
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseAGR7B_Cc160063Not AvailableNegative1041676 - 104308249582.7
udp-n-acetylmuramoylalanyl-d-glutamate 2,6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase)AGR7B_Cc160064Not AvailableNegative1043106 - 104457551315.4
division-specific transpeptidase, penicillin-binding proteinAGR7B_Cc160065Not AvailableNegative1044633 - 104637562914.6
conserved hypothetical proteinAGR7B_Cc160066Not AvailableNegative1046375 - 104692919705.8

Displaying genes 1101 – 1110 of 2748 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.