Agrobacterium salinitolerans str. YIC 5082

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium salinitolerans str. YIC 5082 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is equipped with flagella, which facilitates motility and may enhance its ability to colonize various environments. Notably, it possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability. The strain is cataloged under the accession number MRDH00000000.1, which allows for its identification and differentiation from other strains within the Agrobacterium genus. The specific traits of Agrobacterium salinitolerans str. YIC 5082 suggest that it may have particular adaptations that enable it to thrive in saline environments, as implied by its designation as a salinitolerant species. From a biological and ecological perspective, the ability to tolerate salinity may allow Agrobacterium salinitolerans to occupy niches that are inhospitable to many other microorganisms. This capability could play a significant role in its ecological interactions, including plant associations and biogeochemical cycles in saline habitats. Understanding the traits of this bacterium can provide insights into its potential applications in agriculture, particularly in the context of salt-affected soils, where it may contribute to plant resilience and soil health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium salinitolerans
StrainYIC 5082

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium salinitolerans str. YIC 5082
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium salinitolerans strain YIC 5082 C181, whole genome

Gene Summary

Adenine Count

1013375 bp

Thymine Count

1017068 bp

Guanine Count

1479017 bp

Cytosine Count

1480953 bp

Genome Length

4990461 bp

Protein-coding Genes

4570 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna guanosine(34) transglycosylase tgtBS627_05065Not AvailablePositive1025837 - 102696741896.8
aminodeoxychorismate synthase, component iBS627_05070Not AvailablePositive1027139 - 102831743428.9
diaminopimelate decarboxylaseBS627_05075Not AvailableNegative1028352 - 102962944571.8
amp-dependent synthetaseBS627_05080Not AvailableNegative1029613 - 103114555183.7
acyl carrier proteinBS627_05085Not AvailableNegative1031142 - 10314059683.51
hypothetical proteinBS627_05090Not AvailableNegative1031511 - 103225127420.3
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenaseBS627_05095Not AvailableNegative1032534 - 103366140079.5
methylenetetrahydrofolate--trna-(uracil(54)- c(5))-methyltransferase (fadh(2)-oxidizing) trmfoBS627_05100Not AvailableNegative1033812 - 103526952190.3
duf1127 domain-containing proteinBS627_05105Not AvailableNegative1035790 - 10359335468.56
duf1127 domain-containing proteinBS627_05110Not AvailableNegative1036413 - 10365595581.77

Displaying genes 1021 – 1030 of 4638 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.