Deinococcus puniceus str. DY1

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus puniceus strain DY1 is a notable species characterized by the presence of flagella and possessing a single replicon. The flagella suggest that this bacterium is motile, which could play a role in its ecological interactions and survival strategies. The strain is cataloged under the accession number NZ_CP011387.1, allowing for further genomic study and comparison with other strains. As a member of the genus Deinococcus, DY1 potentially shares traits common to this group, known for its remarkable resilience to extreme environmental conditions. The single replicon indicates a streamlined genomic organization, which may contribute to its adaptability and efficiency in replication and maintenance of genetic integrity. The motility provided by flagella could enhance its ability to navigate through various substrates or environments, possibly aiding in nutrient acquisition or evasion from predators. Understanding the ecological role of Deinococcus puniceus, particularly in harsh habitats where it might be found, could provide insights into its contribution to microbial diversity and ecosystem functioning. Overall, the traits of Deinococcus puniceus strain DY1 highlight its potential significance in microbial ecology, especially in extreme environments where motility and genomic stability are critical for survival. Further research into its ecological interactions and functional capabilities could reveal important aspects of its role in biogeochemical cycles and microbial community dynamics.

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus puniceus
StrainDY1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Deinococcus puniceus strain DY1 chromosome, complete genome.

Gene Summary

Adenine Count

554740 bp

Thymine Count

555333 bp

Guanine Count

931255 bp

Cytosine Count

930655 bp

Genome Length

2971983 bp

Protein-coding Genes

2735 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-quinone oxidoreductase subunit nuokSU48_RS05585C1D0I1Positive1226125 - 122642710677.5
nadh-quinone oxidoreductase subunit lSU48_RS05590Q56227Positive1226437 - 122835368528.3
nadh-quinone oxidoreductase subunit mSU48_RS05595Q56228Positive1228532 - 122995650776.3
nadh-quinone oxidoreductase subunit nSU48_RS05600Q9RUA0Positive1229969 - 123141750814.4
chase2 domain-containing proteinSU48_RS05605P0AA90Negative1231585 - 123307853777.6
fecr family proteinSU48_RS05610Not AvailableNegative1233062 - 123459153324.4
abc-f family atp-binding cassette domain-containing proteinSU48_RS05615O05519Positive1234813 - 123669968525.7
hypothetical proteinSU48_RS05620Not AvailableNegative1236720 - 123701010712.6
uridine kinaseSU48_RS05625Not AvailableNegative1237047 - 123774525907.5
toxic anion resistance proteinSU48_RS05630Not AvailableNegative1237760 - 123898344466.9

Displaying genes 1131 – 1140 of 2795 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

169 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da

Displaying 1–10 of 169 metabolites

Health Effects

No health effects information available for this bacterium.