Pontibacter ramchanderi str. LP43

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter ramchanderi strain LP43 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is known for its single replicon structure, which is an important trait for understanding its genetic organization and replication dynamics. The strain is cataloged under the accession number PJMU00000000.1, which provides a reference for its genomic data. The classification of Pontibacter ramchanderi within the broader context of microbial taxonomy suggests that it may have specific ecological roles, particularly in aquatic environments, given the genus Pontibacter is typically associated with such habitats. The Gram-negative nature of this bacterium may also imply a level of adaptability to various environmental stresses, as this trait is often linked with resilience to certain antimicrobial agents and environmental conditions. Overall, understanding the characteristics of Pontibacter ramchanderi str. LP43 can contribute to broader ecological studies, particularly in assessing the diversity of microbial communities and their functions in nutrient cycling and ecosystem health. The specific traits of this strain may provide insights into the ecological interactions within its habitat and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter ramchanderi
StrainLP43

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter ramchanderi strain LP43 Ga0116985_114, whole genome

Gene Summary

Adenine Count

1074268 bp

Thymine Count

1083014 bp

Guanine Count

1120033 bp

Cytosine Count

1153303 bp

Genome Length

4430618 bp

Protein-coding Genes

3837 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
na+/proline symporterBD749_3339Not AvailableNegative3797500 - 379902656087.4
n-acetylmuramic acid 6-phosphate etheraseBD749_3340Not AvailableNegative3799756 - 380056829089.2
outer membrane protein assembly factor bambBD749_3341Not AvailableNegative3800622 - 380248469092.3
n-acetylmuramoyl-l-alanine amidaseBD749_3342Not AvailableNegative3802780 - 380339722708.3
uncharacterized lipoprotein yddw (upf0748 family)BD749_3344Not AvailableNegative3806042 - 380758359853.9
uncharacterized protein duf4397BD749_3345Not AvailableNegative3807787 - 380856928374.8
susd-like starch-binding protein associating with outer membraneBD749_3346Not AvailableNegative3808612 - 381021659990.8
tonb-linked susc/raga family outer membrane proteinBD749_3347Not AvailableNegative3810222 - 3813329113798.0
uncharacterized protein ybbc (duf1343 family)BD749_3348Not AvailableNegative3813924 - 381518946622.1
sss family solute:na+ symporterBD749_3349Not AvailableNegative3815469 - 381704657712.9

Displaying genes 3331 – 3340 of 3884 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.