Pontibacter ramchanderi str. LP43

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter ramchanderi strain LP43 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is known for its single replicon structure, which is an important trait for understanding its genetic organization and replication dynamics. The strain is cataloged under the accession number PJMU00000000.1, which provides a reference for its genomic data. The classification of Pontibacter ramchanderi within the broader context of microbial taxonomy suggests that it may have specific ecological roles, particularly in aquatic environments, given the genus Pontibacter is typically associated with such habitats. The Gram-negative nature of this bacterium may also imply a level of adaptability to various environmental stresses, as this trait is often linked with resilience to certain antimicrobial agents and environmental conditions. Overall, understanding the characteristics of Pontibacter ramchanderi str. LP43 can contribute to broader ecological studies, particularly in assessing the diversity of microbial communities and their functions in nutrient cycling and ecosystem health. The specific traits of this strain may provide insights into the ecological interactions within its habitat and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter ramchanderi
StrainLP43

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter ramchanderi strain LP43 Ga0116985_114, whole genome

Gene Summary

Adenine Count

1074268 bp

Thymine Count

1083014 bp

Guanine Count

1120033 bp

Cytosine Count

1153303 bp

Genome Length

4430618 bp

Protein-coding Genes

3837 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBD749_0228Not AvailableNegative269547 - 26996315474.0
hypothetical proteinBD749_0229Not AvailableNegative270015 - 27134951261.8
antitoxin component ywqk of ywqjk toxin-antitoxin moduleBD749_0230Not AvailableNegative271346 - 27364088364.5
hypothetical proteinBD749_0231Not AvailableNegative273737 - 27411113431.9
type i restriction enzyme m proteinBD749_0232Not AvailablePositive274345 - 27580255724.5
type i restriction enzyme s subunitBD749_0233Not AvailablePositive275799 - 27701345823.3
hypothetical proteinBD749_0234Not AvailablePositive276994 - 27739215363.5
type i restriction enzyme r subunitBD749_0235Not AvailablePositive277392 - 27977690552.9
pd-(d/e)xk nuclease superfamily proteinBD749_0236Not AvailablePositive279821 - 28082839077.2
agmatine deiminaseBD749_0237Not AvailableNegative280896 - 28175332917.2

Displaying genes 231 – 240 of 3884 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.