Pontibacter ramchanderi str. LP43

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter ramchanderi strain LP43 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is known for its single replicon structure, which is an important trait for understanding its genetic organization and replication dynamics. The strain is cataloged under the accession number PJMU00000000.1, which provides a reference for its genomic data. The classification of Pontibacter ramchanderi within the broader context of microbial taxonomy suggests that it may have specific ecological roles, particularly in aquatic environments, given the genus Pontibacter is typically associated with such habitats. The Gram-negative nature of this bacterium may also imply a level of adaptability to various environmental stresses, as this trait is often linked with resilience to certain antimicrobial agents and environmental conditions. Overall, understanding the characteristics of Pontibacter ramchanderi str. LP43 can contribute to broader ecological studies, particularly in assessing the diversity of microbial communities and their functions in nutrient cycling and ecosystem health. The specific traits of this strain may provide insights into the ecological interactions within its habitat and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter ramchanderi
StrainLP43

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter ramchanderi strain LP43 Ga0116985_114, whole genome

Gene Summary

Adenine Count

1074268 bp

Thymine Count

1083014 bp

Guanine Count

1120033 bp

Cytosine Count

1153303 bp

Genome Length

4430618 bp

Protein-coding Genes

3837 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseBD749_1924Not AvailableNegative2190257 - 219099427156.5
putative membrane proteinBD749_1925Not AvailableNegative2191014 - 219195834891.9
phosphosulfolactate synthaseBD749_1926Not AvailableNegative2192048 - 219283629352.4
tetratricopeptide repeat proteinBD749_1927Not AvailableNegative2192836 - 219423353970.4
nucleoside-diphosphate-sugar epimeraseBD749_1928Not AvailableNegative2194302 - 219531236971.1
tyrosine-protein phosphatase ywqeBD749_1929Not AvailableNegative2195335 - 219608128177.3
alkylation response protein aidb-like acyl-coa dehydrogenaseBD749_1930Not AvailablePositive2196409 - 219754841226.4
ssu ribosomal protein s21pBD749_1931Not AvailablePositive2197712 - 21979067749.48
integrase/recombinase xercBD749_1932Not AvailablePositive2197981 - 219885933690.6
putative sigma-54 modulation proteinBD749_1933Not AvailablePositive2198884 - 219918611609.8

Displaying genes 1921 – 1930 of 3884 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.