Pseudomonas songnenensis str. L103

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas songnenensis str. L103 is characterized by having a single replicon, which is a significant feature in understanding its genomic structure and adaptability. The strain is cataloged under the accession number RWYU00000000.2, providing a reference point for further genomic studies and comparisons with related species within the Pseudomonas genus. Pseudomonas species are well-known for their metabolic diversity and environmental versatility, often thriving in various ecological niches. This specific strain, like others in the Pseudomonas lineage, may possess unique biochemical pathways that allow it to utilize a range of organic compounds as carbon and energy sources. Such metabolic capabilities could play a vital role in bioremediation processes, enabling the degradation of pollutants in contaminated environments. The presence of a single replicon in Pseudomonas songnenensis str. L103 suggests a streamlined genomic organization that might enhance its adaptability and survival in fluctuating conditions. This simplicity could facilitate efficient replication and expression of essential genes, contributing to its ecological success. Understanding the traits of this strain may provide insights into its role within microbial communities, especially in environments where Pseudomonas species are prevalent. In summary, Pseudomonas songnenensis str. L103 exhibits a unique genomic trait with its single replicon, providing a foundation for exploring its ecological roles and potential applications in bioremediation and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas songnenensis
StrainL103

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas songnenensis str. L103
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmarine biofouling-material; marine-biofouling material
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas songnenensis str. L103


Gene Summary

Adenine Count

903162 bp

Thymine Count

875767 bp

Guanine Count

1476443 bp

Cytosine Count

1530053 bp

Genome Length

4786411 bp

Protein-coding Genes

4341 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigEJA06_019485Not AvailablePositive4108142 - 410884025608.8
n-acetylmuramic acid 6-phosphate phosphatase muppEJA06_019490Not AvailablePositive4108840 - 410951124528.4
ycik family oxidoreductaseEJA06_019495Not AvailablePositive4109589 - 411032926547.8
pseudouridine synthaseEJA06_019500Not AvailableNegative4110398 - 411153142364.6
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseEJA06_019505Not AvailableNegative4111645 - 411228922584.5
6-phosphogluconolactonaseEJA06_019510Not AvailableNegative4112307 - 411302025712.2
glucose-6-phosphate dehydrogenaseEJA06_019515Not AvailableNegative4113007 - 411447655171.1
50s ribosomal protein l3 n(5)-glutamine methyltransferaseEJA06_019520Not AvailableNegative4114679 - 411560235004.4
isochorismatase family proteinEJA06_019525Not AvailablePositive4115913 - 411650921289.8
dna mismatch repair protein mutsEJA06_019530Not AvailablePositive4116649 - 411720620842.8

Displaying genes 3871 – 3880 of 4474 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.