Bibersteinia trehalosi USDA-ARS-USMARC-192

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Bibersteinia

Description

Bibersteinia trehalosi USDA-ARS-USMARC-192 is a bacterial strain characterized by a single replicon, which contributes to its genetic stability and adaptability. It is cataloged under the accession NC_020515.1, indicating its sequenced genome is publicly available for research and analysis. Bibersteinia trehalosi is known to be associated with ruminant hosts, particularly in the context of causing disease. Its genomic data can provide insights into the mechanisms of pathogenicity and host interaction, which are crucial for developing strategies for disease management in livestock. The presence of a single replicon in this strain may also facilitate its growth and survival in various environments, potentially influencing its ecological role in the microbiota of ruminants. Understanding its genetic makeup and adaptability can lead to better insights into its behavior and interactions within the host, which is essential for both veterinary microbiology and the broader field of microbial ecology. In conclusion, Bibersteinia trehalosi USDA-ARS-USMARC-192, with its single replicon and specific genomic characteristics, represents an important subject for studying the dynamics of bacterial pathogens in animal health and their ecological impacts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusBibersteinia
SpeciesBibersteinia trehalosi
StrainUSDA-ARS-USMARC-192

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence.

Gene Summary

Adenine Count

713091 bp

Thymine Count

706443 bp

Guanine Count

495907 bp

Cytosine Count

492405 bp

Genome Length

2407846 bp

Protein-coding Genes

2135 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionine--trna ligaseWQG_RS02725Not AvailableNegative555936 - 55801178192.3
disulfide bond formation protein dsbbWQG_RS02730Not AvailableNegative558157 - 55869319965.3
sodium/proton antiporter nhabWQG_RS02735Not AvailableNegative558706 - 56025957387.4
fatty acid metabolism transcriptional regulator fadrWQG_RS02740Not AvailablePositive560362 - 56108427339.9
division/cell wall cluster transcriptional repressor mrazWQG_RS02745Not AvailablePositive561250 - 56170817549.3
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhWQG_RS02750Not AvailablePositive561719 - 56266634803.0
cell division protein ftslWQG_RS02755Not AvailablePositive562666 - 56298012000.7
penicillin-binding transpeptidase domain-containing proteinWQG_RS02760Not AvailablePositive562977 - 56503176207.8
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseWQG_RS02765Not AvailablePositive565104 - 56658553998.5
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseWQG_RS02770Not AvailablePositive567089 - 56848350486.1

Displaying genes 601 – 610 of 2260 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

86 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001210alpha,alpha'-trehalose 6,6'-bismycolateC76H142O15Chemical structure of alpha,alpha'-trehalose 6,6'-bismycolateNot available
Average1295.957Da
Monoisotopic1295.034874Da

Displaying 1–10 of 86 metabolites

Health Effects

No health effects information available for this bacterium.