Stenotrophomonas geniculata N1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas geniculata N1 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility capability. The organism has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The accession number for Stenotrophomonas geniculata N1 is AJLO00000000.2, which is a reference for genomic sequences related to this strain. The presence of flagella is a notable trait, as it can impact the bacterium's ecological interactions, such as its ability to colonize various environments or surfaces. Rod-shaped bacteria often exhibit diverse ecological roles, and the motility afforded by flagella can enhance their capacity to explore and exploit resources in their surroundings. In summary, the morphological and genomic characteristics of Stenotrophomonas geniculata N1, particularly its rod shape and motility, suggest potential ecological advantages in adapting to various niches. This adaptability may play a role in its interactions within microbial communities, influencing both its survival and ecological impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas geniculata
StrainN1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas geniculata N1 contig01, whole genome shotgun

Gene Summary

Adenine Count

783536 bp

Thymine Count

781252 bp

Guanine Count

1559057 bp

Cytosine Count

1554633 bp

Genome Length

4678478 bp

Protein-coding Genes

4104 genes

Non-Coding Genes

126 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycyl-trna synthetase subunit betaW7K_15820Q4UP08Negative3454689 - 345676474141.9
glycyl-trna synthetaseW7K_15825B2FP48Negative3456852 - 345776334770.2
type ii secretion system protein eW7K_15830Q6FA79Positive3457847 - 345968267488.4
glutamine amidotransferaseW7K_15835Q9Y933Positive3459654 - 346040027089.2
membrane proteinW7K_15840Not AvailablePositive3460451 - 346136232708.4
preprotein translocase subunit tatcW7K_15845D0KWI6Negative3461448 - 346219727150.0
preprotein translocase subunit tatbW7K_15850Q8PEX3Negative3462194 - 346265216633.5
preprotein translocase subunit secaW7K_15855B2FP54Negative3462668 - 34628958373.88
sh3 domain-containing-like protein 1W7K_15860A7A261Negative3462971 - 346386430808.5
ferrochelataseW7K_15865B4SNS0Positive3464030 - 346499235429.5

Displaying genes 3191 – 3200 of 4230 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

230 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da

Displaying 1–10 of 230 metabolites

Health Effects

No health effects information available for this bacterium.