Rhodanobacter sp. FW021-MT20

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Rhodanobacter

Description

Rhodanobacter sp. FW021-MT20 is a Gram-negative bacterium characterized by its rod-shaped morphology. It has a single replicon, which indicates a streamlined genetic organization. The genetic sequence of this organism is cataloged under the accession number AJXS00000000.1, providing a basis for further study and comparison within the genus Rhodanobacter. This bacterium belongs to a group known for its versatility in various environmental conditions. While specific ecological roles for Rhodanobacter sp. FW021-MT20 are not detailed, members of the Rhodanobacter genus are often associated with soil environments and can play significant roles in biogeochemical cycles. Their capacity to thrive in diverse habitats suggests potential applications in bioremediation and nutrient cycling, contributing to soil health and fertility. In summary, Rhodanobacter sp. FW021-MT20 exhibits key traits such as Gram-negative cell structure, rod shape, and a single replicon, positioning it within a genus known for ecological significance. Further investigation into its specific functions and interactions within its environment could provide insights into its role in ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusRhodanobacter
SpeciesRhodanobacter sp. FW021-MT20
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodanobacter sp. 115 contig485, whole genome shotgun sequence.

Gene Summary

Adenine Count

749870 bp

Thymine Count

748068 bp

Guanine Count

1369306 bp

Cytosine Count

1372516 bp

Genome Length

4239760 bp

Protein-coding Genes

3965 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc-binding cmp/dcmp deaminase proteinUU5_05471Not AvailablePositive1043125 - 104344211511.5
hypothetical proteinUU5_05476Not AvailablePositive1043439 - 104414625528.0
Trna-lysNot AvailableNot AvailablePositive1044234 - 1044309Not Available
queuosine biosynthesis protein quecUU5_05481Q4UXK8Negative1044372 - 104505824108.8
organic radical activating enzymeUU5_05486Q8KFK8Negative1045243 - 104591424922.9
tol-pal system protein ybgfUU5_05491Not AvailableNegative1045945 - 104638215674.3
hypothetical proteinUU5_05498Not AvailablePositive1046383 - 10465696477.81
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligaseUU5_05503Not AvailableNegative1046639 - 104692410337.5
hypothetical proteinUU5_05508Q47BA9Positive1047021 - 10471835698.89
putative atpaseUU5_05513P64613Positive1047460 - 104832632224.7

Displaying genes 1051 – 1060 of 4016 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

222 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da

Displaying 1–10 of 222 metabolites

Health Effects

No health effects information available for this bacterium.