Clostridioides difficile Y384

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile Y384 is a Gram-positive, anaerobic, rod-shaped bacterium that exhibits a unique habitat as a host-associated organism. It is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. The cells of C. difficile Y384 can be found in various arrangements, including chains, pairs, and singles, and it possesses flagella, which contribute to its mobility. This bacterium thrives optimally at a temperature of 37°C and is categorized as mesophilic, meaning it can grow within a moderate temperature range. C. difficile Y384 has a single replicon and one membrane, which is characteristic of many bacteria within its genus. Its biotic relationship is described as free-living, suggesting that while it is associated with hosts, it can also exist independently in the environment. The ability of C. difficile Y384 to survive and thrive in anaerobic conditions is particularly significant, as it indicates adaptation to specific ecological niches within the host where oxygen levels are low. This trait is crucial for its role in the gut microbiome, where it can impact the overall health of the host and contribute to the balance of microbial populations. The presence of flagella and mobility may enhance its ability to colonize and persist in the gastrointestinal tract, potentially influencing disease dynamics associated with Clostridioides difficile infections.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainY384

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile Y384
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.802,

Gene Summary

Adenine Count

2341214 bp

Thymine Count

2329045 bp

Guanine Count

1127744 bp

Cytosine Count

1118679 bp

Genome Length

6916682 bp

Protein-coding Genes

6683 genes

Non-Coding Genes

276 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrodipicolinate synthetase family proteinQQG_3144Not AvailableNegative6209697 - 621059033819.8
fumarylacetoacetate (faa) hydrolase family proteinQQG_3145Not AvailableNegative6210670 - 621157233900.3
d-galactarate dehydratase / altronate hydrolase family proteinQQG_3146Not AvailableNegative6211622 - 621278241599.8
saf domain proteinQQG_3147Not AvailableNegative6212938 - 621324311253.6
2-keto-3-deoxygluconate permease family proteinQQG_3148Not AvailableNegative6213341 - 621431533756.4
bacterial transcriptional regulator family proteinQQG_3149Not AvailablePositive6214897 - 621567329050.1
iron-containing alcohol dehydrogenase family proteinQQG_3150Not AvailablePositive6215998 - 621714341104.6
bacterial sh3 domain proteinQQG_3151Not AvailableNegative6217298 - 621814932641.6
hypothetical proteinQQG_3152Not AvailableNegative6218283 - 621870515499.7
pyridine nucleotide-disulfide oxidoreductase family proteinQQG_3153Not AvailableNegative6219368 - 622075651262.1

Displaying genes 6291 – 6300 of 6959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.