Clostridioides difficile Y384

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile Y384 is a Gram-positive, anaerobic, rod-shaped bacterium that exhibits a unique habitat as a host-associated organism. It is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. The cells of C. difficile Y384 can be found in various arrangements, including chains, pairs, and singles, and it possesses flagella, which contribute to its mobility. This bacterium thrives optimally at a temperature of 37°C and is categorized as mesophilic, meaning it can grow within a moderate temperature range. C. difficile Y384 has a single replicon and one membrane, which is characteristic of many bacteria within its genus. Its biotic relationship is described as free-living, suggesting that while it is associated with hosts, it can also exist independently in the environment. The ability of C. difficile Y384 to survive and thrive in anaerobic conditions is particularly significant, as it indicates adaptation to specific ecological niches within the host where oxygen levels are low. This trait is crucial for its role in the gut microbiome, where it can impact the overall health of the host and contribute to the balance of microbial populations. The presence of flagella and mobility may enhance its ability to colonize and persist in the gastrointestinal tract, potentially influencing disease dynamics associated with Clostridioides difficile infections.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainY384

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile Y384
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.802,

Gene Summary

Adenine Count

2341214 bp

Thymine Count

2329045 bp

Guanine Count

1127744 bp

Cytosine Count

1118679 bp

Genome Length

6916682 bp

Protein-coding Genes

6683 genes

Non-Coding Genes

276 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated cas5 domain proteinQQG_3124Not AvailableNegative6187407 - 618810827337.3
crispr-associated autoregulator devr family proteinQQG_3125Not AvailableNegative6188110 - 618902434844.8
crispr-associated family proteinQQG_3126Not AvailableNegative6189026 - 619087672693.3
crispr-associated endoribonuclease cas6QQG_3127Not AvailableNegative6190882 - 619161928992.2
wyl domain proteinQQG_3128Not AvailableNegative6191697 - 619258435051.9
ftsx-like permease family proteinQQG_3129Not AvailableNegative6192704 - 619462073963.6
abc transporter family proteinQQG_3130Not AvailableNegative6194620 - 619536627530.5
undecaprenyl-diphosphatase upppQQG_3131Not AvailableNegative6195438 - 619628931113.4
histidine kinase-, dna gyrase b-, and hsp90-like atpase family proteinQQG_3132Not AvailableNegative6196537 - 619731029693.1
response regulatorQQG_3133Not AvailableNegative6197551 - 619824327189.8

Displaying genes 6271 – 6280 of 6959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.