Clostridioides difficile Y384

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile Y384 is a Gram-positive, anaerobic, rod-shaped bacterium that exhibits a unique habitat as a host-associated organism. It is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. The cells of C. difficile Y384 can be found in various arrangements, including chains, pairs, and singles, and it possesses flagella, which contribute to its mobility. This bacterium thrives optimally at a temperature of 37°C and is categorized as mesophilic, meaning it can grow within a moderate temperature range. C. difficile Y384 has a single replicon and one membrane, which is characteristic of many bacteria within its genus. Its biotic relationship is described as free-living, suggesting that while it is associated with hosts, it can also exist independently in the environment. The ability of C. difficile Y384 to survive and thrive in anaerobic conditions is particularly significant, as it indicates adaptation to specific ecological niches within the host where oxygen levels are low. This trait is crucial for its role in the gut microbiome, where it can impact the overall health of the host and contribute to the balance of microbial populations. The presence of flagella and mobility may enhance its ability to colonize and persist in the gastrointestinal tract, potentially influencing disease dynamics associated with Clostridioides difficile infections.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainY384

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile Y384
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.802,

Gene Summary

Adenine Count

2341214 bp

Thymine Count

2329045 bp

Guanine Count

1127744 bp

Cytosine Count

1118679 bp

Genome Length

6916682 bp

Protein-coding Genes

6683 genes

Non-Coding Genes

276 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bacterial transcriptional regulator family proteinQQG_5997Not AvailablePositive1959625 - 196038328861.1
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family proteinQQG_5998Not AvailablePositive1960483 - 196112722794.0
pfkb carbohydrate kinase family proteinQQG_5999Not AvailablePositive1961134 - 196214136888.1
4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase 1QQG_6000Not AvailablePositive1962166 - 196299932090.0
short chain dehydrogenase family proteinQQG_6001Not AvailablePositive1963031 - 196382228150.8
helix-turn-helix family proteinQQG_6002Not AvailableNegative1964187 - 196520638555.6
aldose 1-epimerase family proteinQQG_6003Not AvailableNegative1965228 - 196623537882.9
beta-phosphoglucomutaseQQG_6004Not AvailableNegative1966228 - 196689324274.0
glycosyl hydrolase family 65 central catalytic domain proteinQQG_6005Not AvailableNegative1966886 - 196918088244.6
pts system, glucose subfamily, iia component domain proteinQQG_6006Not AvailablePositive1969440 - 197160578160.6

Displaying genes 2261 – 2270 of 6959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.