Clostridioides difficile Y384

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile Y384 is a Gram-positive, anaerobic, rod-shaped bacterium that exhibits a unique habitat as a host-associated organism. It is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. The cells of C. difficile Y384 can be found in various arrangements, including chains, pairs, and singles, and it possesses flagella, which contribute to its mobility. This bacterium thrives optimally at a temperature of 37°C and is categorized as mesophilic, meaning it can grow within a moderate temperature range. C. difficile Y384 has a single replicon and one membrane, which is characteristic of many bacteria within its genus. Its biotic relationship is described as free-living, suggesting that while it is associated with hosts, it can also exist independently in the environment. The ability of C. difficile Y384 to survive and thrive in anaerobic conditions is particularly significant, as it indicates adaptation to specific ecological niches within the host where oxygen levels are low. This trait is crucial for its role in the gut microbiome, where it can impact the overall health of the host and contribute to the balance of microbial populations. The presence of flagella and mobility may enhance its ability to colonize and persist in the gastrointestinal tract, potentially influencing disease dynamics associated with Clostridioides difficile infections.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainY384

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile Y384
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

UNVERIFIED_ORG: Clostridioides difficile Y384 gcdY384.contig.802,

Gene Summary

Adenine Count

2341214 bp

Thymine Count

2329045 bp

Guanine Count

1127744 bp

Cytosine Count

1118679 bp

Genome Length

6916682 bp

Protein-coding Genes

6683 genes

Non-Coding Genes

276 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-lactate dehydrogenaseQQG_5409Not AvailablePositive1419861 - 142080534222.9
transposase is116/is110/is902 family proteinQQG_5410Not AvailablePositive1421576 - 142282648319.4
pts system, glucitol/sorbitol-specific, iibc component family proteinQQG_5411Not AvailableNegative1422968 - 142396335149.1
pts system, glucitol/sorbitol-specific, iic component family proteinQQG_5412Not AvailableNegative1423981 - 142453520604.7
glucitol operon activator family proteinQQG_5413Not AvailableNegative1424523 - 142501418897.9
phosphoenolpyruvate-dependent sugar phosphotransferase system, eiia 2 family proteinQQG_5414Not AvailableNegative1425007 - 142568426589.0
oxidoreductase, nad-binding rossmann fold family proteinQQG_5415Not AvailableNegative1426288 - 14264998028.76
degt/dnrj/eryc1/strs aminotransferase family proteinQQG_5416Not AvailableNegative1426512 - 142762141004.7
sugar o-acyltransferase, sialic acid o-acetyltransferase neud family proteinQQG_5417Not AvailableNegative1427644 - 142832124494.0
udp-n-acetylglucosamine 2-epimerase family proteinQQG_5418Not AvailableNegative1428294 - 14285248800.37

Displaying genes 1721 – 1730 of 6959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.