Clostridioides difficile F501

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile F501 is a Gram-positive, anaerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism is classified as a chemoorganotroph, meaning it derives its energy from organic compounds. C. difficile F501 typically exists in host-associated habitats, indicating its relationship with a host organism, although it can also be described as free-living. The bacterium exhibits a cell arrangement that can be observed in chains, pairs, or as single cells. It thrives optimally at a temperature of 37°C, fitting within the mesophilic temperature range, which is conducive for the growth of many pathogenic and non-pathogenic microorganisms. C. difficile F501 has a single replicon and one membrane, characteristics that are typical for members of the Clostridia class. The presence of flagella not only supports its mobility but may also play a role in its ability to colonize host environments. Understanding the traits of Clostridioides difficile F501 can provide insights into its behavior in various ecological niches, particularly in relation to its pathogenicity and interactions within the gastrointestinal microbiota of hosts. The bacterium's ability to thrive in anaerobic conditions and its energy acquisition methods are critical to its survival and potential impact on host health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainF501

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile F501
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.271,

Gene Summary

Adenine Count

1110021 bp

Thymine Count

1122080 bp

Guanine Count

1265373 bp

Cytosine Count

1231135 bp

Genome Length

4728610 bp

Protein-coding Genes

4483 genes

Non-Coding Genes

160 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidohydrolase family proteinQOE_0970Not AvailableNegative4175567 - 417688049252.4
molybdopterin-binding domain of aldehyde dehydrogenase family proteinQOE_0971Not AvailableNegative4176881 - 417917283960.9
co dehydrogenase flavoc-terminal domain proteinQOE_0972Not AvailableNegative4179162 - 417954513964.9
putative fad-binding subunit of xanthine dehydrogenase dehydrogenase domain proteinQOE_0973Not AvailableNegative4179803 - 41799555438.8
[2fe-2s] binding domain proteinQOE_0974Not AvailableNegative4179994 - 41802128110.77
amidohydrolase family proteinQOE_0975Not AvailableNegative4180512 - 418093415485.0
amidohydrolase family proteinQOE_0976Not AvailableNegative4180982 - 418191734959.5
dihydropyrimidinaseQOE_0977Not AvailableNegative4181935 - 418330550964.9
peptidase m20/m25/m40 family proteinQOE_0978Not AvailableNegative4183438 - 418386715856.5
diaminopropionate ammonia-lyase family proteinQOE_0979Not AvailableNegative4183868 - 418460627317.4

Displaying genes 4151 – 4160 of 4643 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

35 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000558D-galacto-hexodialdoseC6H10O6Chemical structure of D-galacto-hexodialdoseNot available
Average178.14Da
Monoisotopic178.047738Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001786(S,S)-tartrateC4H4O6Chemical structure of (S,S)-tartrateNot available
Average148.071Da
Monoisotopic148.001885Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002842UDP-alpha-D-xyloseC14H20N2O16P2Chemical structure of UDP-alpha-D-xyloseNot available
Average534.2599Da
Monoisotopic534.028805626Da
BASm0002950(E)-caffeateC9H7O4Chemical structure of (E)-caffeateNot available
Average179.152Da
Monoisotopic179.0349823Da

Displaying 1–10 of 35 metabolites

Health Effects

No health effects information available for this bacterium.