Pseudomonas mandelii JR-1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas mandelii JR-1 is characterized by the presence of two replicons, which are essential for its genetic stability and adaptability. The organism has been cataloged with the following GenBank accession numbers: NZ_CP005961.1 and NZ_CP005960.1. These accessions indicate the genomic sequences that provide insights into its genetic makeup and potential functional capabilities. The dual-replicon structure of Pseudomonas mandelii JR-1 may contribute to its metabolic versatility and ability to thrive in various environments. This trait is common among Pseudomonas species, allowing them to adapt to different ecological niches and utilize a wide range of substrates for growth. Such flexibility is particularly relevant in ecological contexts where competition for resources is intense. Additionally, the presence of two replicons can enhance the organism’s resilience against environmental stresses, potentially allowing it to survive in challenging conditions. This trait may also play a role in the organism's interactions with other microorganisms within its habitat, influencing community dynamics and ecological balance. In summary, the genomic structure of Pseudomonas mandelii JR-1, with its two replicons, underscores its potential for metabolic diversity and adaptation to various ecological niches, which may have significant implications for its survival and interactions in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas mandelii
StrainJR-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas mandelii JR-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

92138 bp

Thymine Count

92247 bp

Guanine Count

113260 bp

Cytosine Count

112867 bp

Genome Length

410512 bp

Protein-coding Genes

416 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lon peptidase substrate-binding domain-containing proteinOU5_RS20990Not AvailablePositive4713616 - 471420621567.1
hypothetical proteinOU5_RS20995Not AvailablePositive4714319 - 47145347977.43
hypothetical proteinOU5_RS21000Not AvailablePositive4714622 - 471520021348.3
bifunctional deda family/phosphatase pap2 family proteinOU5_RS21005Not AvailableNegative4715255 - 471657147288.0
dna-3-methyladenine glycosylaseOU5_RS21010Not AvailableNegative4716748 - 471744625783.0
glutamate-5-semialdehyde dehydrogenaseOU5_RS21015Not AvailablePositive4717636 - 471890745155.2
nicotinate-nucleotide adenylyltransferaseOU5_RS21020Not AvailablePositive4718909 - 471959824852.9
ribosome silencing factorOU5_RS21025Not AvailablePositive4719672 - 472016618222.8
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhOU5_RS21030Not AvailablePositive4720176 - 472064317693.5
penicillin-binding protein 2OU5_RS21035Not AvailablePositive4720654 - 472254970463.6

Displaying genes 4731 – 4740 of 6654 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.