Pseudomonas mandelii JR-1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas mandelii JR-1 is characterized by the presence of two replicons, which are essential for its genetic stability and adaptability. The organism has been cataloged with the following GenBank accession numbers: NZ_CP005961.1 and NZ_CP005960.1. These accessions indicate the genomic sequences that provide insights into its genetic makeup and potential functional capabilities. The dual-replicon structure of Pseudomonas mandelii JR-1 may contribute to its metabolic versatility and ability to thrive in various environments. This trait is common among Pseudomonas species, allowing them to adapt to different ecological niches and utilize a wide range of substrates for growth. Such flexibility is particularly relevant in ecological contexts where competition for resources is intense. Additionally, the presence of two replicons can enhance the organism’s resilience against environmental stresses, potentially allowing it to survive in challenging conditions. This trait may also play a role in the organism's interactions with other microorganisms within its habitat, influencing community dynamics and ecological balance. In summary, the genomic structure of Pseudomonas mandelii JR-1, with its two replicons, underscores its potential for metabolic diversity and adaptation to various ecological niches, which may have significant implications for its survival and interactions in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas mandelii
StrainJR-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas mandelii JR-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

92138 bp

Thymine Count

92247 bp

Guanine Count

113260 bp

Cytosine Count

112867 bp

Genome Length

410512 bp

Protein-coding Genes

416 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
biotin-independent malonate decarboxylase subunit betaOU5_RS19345Not AvailablePositive4360419 - 436127030260.3
biotin-independent malonate decarboxylase subunit gammaOU5_RS19350Not AvailablePositive4361267 - 436207028168.7
malonate decarboxylase holo-acp synthaseOU5_RS19355Not AvailablePositive4362064 - 436267522152.9
malonate decarboxylase subunit epsilonOU5_RS19360Not AvailablePositive4362672 - 436358332111.9
malonate transporter subunit madlOU5_RS19365Not AvailablePositive4363649 - 436404113360.0
malonate transporter subunit madmOU5_RS19370Not AvailablePositive4364047 - 436481125575.3
lysr substrate-binding domain-containing proteinOU5_RS19375Not AvailableNegative4364897 - 436581134189.5
paqr family membrane homeostasis protein trhaOU5_RS19380Not AvailablePositive4365941 - 436655822611.5
cell envelope protein smpaOU5_RS35365Not AvailablePositive4366559 - 43666754015.82
lysr family transcriptional regulatorOU5_RS19385Not AvailableNegative4366672 - 436758032655.8

Displaying genes 4401 – 4410 of 6654 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.