Pseudomonas mandelii JR-1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas mandelii JR-1 is characterized by the presence of two replicons, which are essential for its genetic stability and adaptability. The organism has been cataloged with the following GenBank accession numbers: NZ_CP005961.1 and NZ_CP005960.1. These accessions indicate the genomic sequences that provide insights into its genetic makeup and potential functional capabilities. The dual-replicon structure of Pseudomonas mandelii JR-1 may contribute to its metabolic versatility and ability to thrive in various environments. This trait is common among Pseudomonas species, allowing them to adapt to different ecological niches and utilize a wide range of substrates for growth. Such flexibility is particularly relevant in ecological contexts where competition for resources is intense. Additionally, the presence of two replicons can enhance the organism’s resilience against environmental stresses, potentially allowing it to survive in challenging conditions. This trait may also play a role in the organism's interactions with other microorganisms within its habitat, influencing community dynamics and ecological balance. In summary, the genomic structure of Pseudomonas mandelii JR-1, with its two replicons, underscores its potential for metabolic diversity and adaptation to various ecological niches, which may have significant implications for its survival and interactions in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas mandelii
StrainJR-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas mandelii JR-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

92138 bp

Thymine Count

92247 bp

Guanine Count

113260 bp

Cytosine Count

112867 bp

Genome Length

410512 bp

Protein-coding Genes

416 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional protein tyrosine phosphatase family protein/nad(p)/fad-dependent oxidoreductaseOU5_RS04790Not AvailableNegative1112153 - 111382360042.4
mbl fold metallo-hydrolaseOU5_RS04795Not AvailableNegative1113876 - 111475432025.1
sigma-54-dependent fis family transcriptional regulatorOU5_RS04800Not AvailablePositive1114992 - 111631748867.8
cytochrome oxidase putative small subunit cydpOU5_RS35630Not AvailablePositive1116492 - 11166686549.09
cytochrome ubiquinol oxidase subunit iOU5_RS04810Not AvailablePositive1116665 - 111823658725.2
cytochrome d ubiquinol oxidase subunit iiOU5_RS04815Not AvailablePositive1118229 - 111936541209.9
cytochrome bd-i oxidase subunit cydxOU5_RS33045Not AvailablePositive1119388 - 11195104506.43
cyd operon ybge family proteinOU5_RS04825Not AvailablePositive1119507 - 111979410361.2
helix-turn-helix domain-containing proteinOU5_RS04830Not AvailableNegative1119904 - 112059326098.2
carbon-nitrogen hydrolase family proteinOU5_RS04835Not AvailablePositive1120698 - 112163933652.4

Displaying genes 1531 – 1540 of 6654 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.