Pseudomonas sp. GM84

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. GM84 is characterized by having a single replicon, which suggests a streamlined genomic organization that can influence its adaptability in various environments. The specific accession for its genomic data is AKJC00000000.1, providing a reference point for researchers interested in studying its genetic composition and potential applications. Pseudomonas species are generally known for their metabolic versatility, which allows them to thrive in diverse ecological niches. This versatility often includes the ability to degrade a wide range of organic pollutants, making them significant in bioremediation efforts. Understanding the specific traits of Pseudomonas sp. GM84 can contribute to our knowledge of its ecological role and potential utility in environmental microbiology. Given its single replicon and the associated genomic characteristics, Pseudomonas sp. GM84 may exhibit efficient regulatory mechanisms that optimize its metabolic processes. This efficiency could enhance its survival in fluctuating ecological conditions, further allowing it to occupy various habitats. The investigation of its genomic data may reveal insights into its functional capabilities, particularly in relation to its interactions with other microorganisms and its environment. Thus, studying Pseudomonas sp. GM84 not only contributes to our understanding of microbial diversity but also highlights its potential for applications in environmental management and biotechnological innovations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. GM84
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. GM84
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. GM84 PMI38_contig446.446, whole genome shotgun

Gene Summary

Adenine Count

1075006 bp

Thymine Count

1068929 bp

Guanine Count

1836991 bp

Cytosine Count

1837846 bp

Genome Length

5818772 bp

Protein-coding Genes

5216 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
multisubunit na+/h+ antiporter, mnhe subunitPMI38_04774Not AvailableNegative5179671 - 518015917927.5
formate hydrogenlyase subunit 3/multisubunit na+/h+ antiporter, mnhd subunitPMI38_04775Q52981Negative5180156 - 518183559294.1
multisubunit na+/h+ antiporter, mnhc subunitPMI38_04776Q52980Negative5181832 - 518217612391.5
nadh:ubiquinone oxidoreductase subunit 5 (chain l)/multisubunit na+/h+ antiporter, mnha subunitPMI38_04777Q52978Negative5182176 - 5185091104999.0
dmt(drug/metabolite transporter) superfamily permeasePMI38_04778Not AvailableNegative5185241 - 518619133667.3
putative transcriptional regulatorPMI38_04779Not AvailablePositive5186275 - 518683820632.5
nicotinamidase-like amidasePMI38_04780P96654Negative5186906 - 518745419501.1
redox-sensitive transcriptional activator soxrPMI38_04781Q51506Negative5187536 - 518800617401.0
antibiotic biosynthesis monooxygenasePMI38_04782Not AvailablePositive5188094 - 518847413922.4
hypothetical proteinPMI38_04783Not AvailableNegative5188453 - 518922328552.7

Displaying genes 4761 – 4770 of 5319 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

352 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 352 metabolites

Health Effects

No health effects information available for this bacterium.