Rhizobium sp. AP16

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. AP16 is a rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This species is identified by its unique accession number AJVM00000000.1, indicating its genetic sequence has been cataloged for scientific reference. Rhizobium species are well-known for their ability to establish symbiotic relationships with legumes, facilitating nitrogen fixation in the soil. The presence of a single replicon suggests a streamlined genetic organization, which may be advantageous for efficient replication and resource utilization in its ecological niche. This trait can be indicative of the bacterium's adaptation to its environment, allowing it to thrive in various soil conditions where it interacts with plant roots. Biologically, Rhizobium sp. AP16 plays a crucial role in enhancing soil fertility through nitrogen fixation, thereby supporting plant growth and contributing to the overall health of the ecosystem. The mutualistic relationship between Rhizobium species and legumes is vital for sustainable agriculture, as it reduces the need for chemical fertilizers and promotes biodiversity in soil microbiomes. The study of Rhizobium sp. AP16, with its specific traits, contributes to our understanding of microbial ecology and the importance of symbiotic interactions in nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. AP16
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. AP16
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. AP16 PMI03_contig124.124, whole genome shotgun

Gene Summary

Adenine Count

1291982 bp

Thymine Count

1293636 bp

Guanine Count

1957393 bp

Cytosine Count

1954608 bp

Genome Length

6497619 bp

Protein-coding Genes

6104 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
permease component of abc-type sugar transporterPMI03_05782Not AvailableNegative6057133 - 605806534248.3
abc-type sugar transport system, periplasmic componentPMI03_05783Not AvailableNegative6058067 - 605941348229.4
putative dehydrogenasePMI03_05784Not AvailablePositive6059592 - 606074040946.1
esterase/lipasePMI03_05785Not AvailablePositive6060761 - 606171434416.8
transcriptional regulatorPMI03_05786Not AvailableNegative6061733 - 606276438090.7
sugar kinase, ribokinasePMI03_05787Not AvailablePositive6062967 - 606396535003.0
d-tagatose-bisphosphate aldolase, class ii, non-catalytic subunitPMI03_05788Not AvailablePositive6063962 - 606526046366.1
haloacid dehalogenase superfamily protein, subfamily ia, variant 3 with third motif having dd or edPMI03_05789Not AvailableNegative6065352 - 606602323512.3
transcriptional regulator with sigma factor-related n-terminal domainPMI03_05790Not AvailableNegative6066039 - 606694731497.0
tagatose-1,6-bisphosphate aldolasePMI03_05791Not AvailablePositive6067186 - 606812734053.9

Displaying genes 5761 – 5770 of 6175 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.