Rhizobium sp. AP16

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. AP16 is a rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This species is identified by its unique accession number AJVM00000000.1, indicating its genetic sequence has been cataloged for scientific reference. Rhizobium species are well-known for their ability to establish symbiotic relationships with legumes, facilitating nitrogen fixation in the soil. The presence of a single replicon suggests a streamlined genetic organization, which may be advantageous for efficient replication and resource utilization in its ecological niche. This trait can be indicative of the bacterium's adaptation to its environment, allowing it to thrive in various soil conditions where it interacts with plant roots. Biologically, Rhizobium sp. AP16 plays a crucial role in enhancing soil fertility through nitrogen fixation, thereby supporting plant growth and contributing to the overall health of the ecosystem. The mutualistic relationship between Rhizobium species and legumes is vital for sustainable agriculture, as it reduces the need for chemical fertilizers and promotes biodiversity in soil microbiomes. The study of Rhizobium sp. AP16, with its specific traits, contributes to our understanding of microbial ecology and the importance of symbiotic interactions in nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. AP16
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. AP16
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. AP16 PMI03_contig124.124, whole genome shotgun

Gene Summary

Adenine Count

1291982 bp

Thymine Count

1293636 bp

Guanine Count

1957393 bp

Cytosine Count

1954608 bp

Genome Length

6497619 bp

Protein-coding Genes

6104 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cobalamin biosynthesis protein cobdPMI03_03992Not AvailableNegative4145624 - 414660434848.5
l-threonine-o-3-phosphate decarboxylasePMI03_03993Not AvailableNegative4146601 - 414759935945.3
cobyrinic acid a,c-diamide synthasePMI03_03994Not AvailableNegative4147596 - 414890345993.7
uroporphyrin-iii c-methyltransferasePMI03_03995Not AvailableNegative4148900 - 414974829189.6
inosine-uridine nucleoside n-ribohydrolasePMI03_03996Not AvailableNegative4150053 - 415100334192.1
cobalamin biosynthesis protein cbigPMI03_03997Not AvailableNegative4151217 - 415162114349.4
putative permeasePMI03_03998Not AvailablePositive4151773 - 415255827328.9
hypothetical proteinPMI03_03999Not AvailablePositive4152662 - 415302713573.9
putative transcriptional regulatorPMI03_04000Not AvailablePositive4153024 - 415382729565.1
cob(i)alamin adenosyltransferasePMI03_04001Not AvailableNegative4153846 - 415449024084.9

Displaying genes 3991 – 4000 of 6175 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.