Rhizobium sp. AP16

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. AP16 is a rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This species is identified by its unique accession number AJVM00000000.1, indicating its genetic sequence has been cataloged for scientific reference. Rhizobium species are well-known for their ability to establish symbiotic relationships with legumes, facilitating nitrogen fixation in the soil. The presence of a single replicon suggests a streamlined genetic organization, which may be advantageous for efficient replication and resource utilization in its ecological niche. This trait can be indicative of the bacterium's adaptation to its environment, allowing it to thrive in various soil conditions where it interacts with plant roots. Biologically, Rhizobium sp. AP16 plays a crucial role in enhancing soil fertility through nitrogen fixation, thereby supporting plant growth and contributing to the overall health of the ecosystem. The mutualistic relationship between Rhizobium species and legumes is vital for sustainable agriculture, as it reduces the need for chemical fertilizers and promotes biodiversity in soil microbiomes. The study of Rhizobium sp. AP16, with its specific traits, contributes to our understanding of microbial ecology and the importance of symbiotic interactions in nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. AP16
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. AP16
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. AP16 PMI03_contig124.124, whole genome shotgun

Gene Summary

Adenine Count

1291982 bp

Thymine Count

1293636 bp

Guanine Count

1957393 bp

Cytosine Count

1954608 bp

Genome Length

6497619 bp

Protein-coding Genes

6104 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphate abc transporter, permease protein pstcPMI03_02100Not AvailableNegative2234959 - 223593034265.3
phosphate abc transporter, phosphate-binding proteinPMI03_02101Not AvailableNegative2236006 - 223703136309.0
putative enzyme of the cupin superfamilyPMI03_02102Not AvailableNegative2237314 - 223765812950.1
d-alanine--d-alanine ligasePMI03_02103Not AvailableNegative2237752 - 223881937988.9
oah/oas sulfhydrylasePMI03_02104Not AvailableNegative2238929 - 224021245695.3
putative coa-binding proteinPMI03_02105Not AvailableNegative2240384 - 224081215672.0
hypothetical proteinPMI03_02106Not AvailablePositive2240926 - 224125212404.8
putative membrane proteinPMI03_02107Not AvailablePositive2242157 - 224299329039.4
ribosomal protein l13, bacterial typePMI03_02108Not AvailablePositive2243232 - 224369617384.2
ribosomal protein s9PMI03_02109Not AvailablePositive2243699 - 224416616766.4

Displaying genes 2121 – 2130 of 6175 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.